View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10461_low_3 (Length: 486)
Name: NF10461_low_3
Description: NF10461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10461_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 12 - 471
Target Start/End: Complemental strand, 9301102 - 9300643
Alignment:
| Q |
12 |
gagaagaataaacaatctatagtggtatgaggaagactggaagagtaatatgaattaagagtacaggaacaagaaaattttgcaaaattgatatcagaac |
111 |
Q |
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| T |
9301102 |
gagaagaataaacaatctatagtggtatgaggaagactggaagagtaatatgaattaagagtacaggaacaagaaaattttgcaaaattgatatcagaac |
9301003 |
T |
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| Q |
112 |
taagcctatggataatattcaactgaattaagaatttgaaactaaacatgtcctacgatctgttcaagatatctgttagaaaaccaaaaataacataatt |
211 |
Q |
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| T |
9301002 |
taagcctatggataatattcaactgaattaagaatttgaaactaaacatgtcctacgatctgttcaagatatctgttagaaaaccaaaaataacataatt |
9300903 |
T |
|
| Q |
212 |
cctctcctcagtcaactataaataagcacttttgcatgaggtaaaagaaattctaaatgagcaccagaaagcttttagacatgaaatatcaattagtaca |
311 |
Q |
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| T |
9300902 |
cctctcctcagtcaactataaataagcacttttgcatgaggtaaaagaaattctaaatgagcaccagaaagcttttagacatgaaatatcaattagtaca |
9300803 |
T |
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| Q |
312 |
taaactctgaaaacttaaaaacagcttttggacatgtcataaggtctcaaacaatctcacaaatgcttatacgactagataaactgaaataaaccgatcc |
411 |
Q |
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| T |
9300802 |
taaactctgaaaacttaaaaacagcttttggacatgtcataaggtctcaaacaatctcacaaatgcttatacgactagataaactgaaataaaccgatcc |
9300703 |
T |
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| Q |
412 |
aaacagacccgttttctgattattttcgtgtttaccatttttggagtgatatcttttgtg |
471 |
Q |
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| T |
9300702 |
aaacagacccgttttctgattatttttgtgtttaccatttttggagtgatatcttttgtg |
9300643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 354
Target Start/End: Complemental strand, 39551233 - 39551205
Alignment:
| Q |
326 |
ttaaaaacagcttttggacatgtcataag |
354 |
Q |
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| T |
39551233 |
ttaaaaacagcttttggacatgtcataag |
39551205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 417
Target Start/End: Original strand, 6977508 - 6977568
Alignment:
| Q |
357 |
ctcaaacaatctcacaaatgcttatacgactagataaactgaaataaaccgatccaaacag |
417 |
Q |
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| T |
6977508 |
ctcaaacaatctcacaaatgcttatgccaatagataaactctaataagtcaatccaaacag |
6977568 |
T |
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