View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10461_low_4 (Length: 481)
Name: NF10461_low_4
Description: NF10461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10461_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Original strand, 41144214 - 41144687
Alignment:
| Q |
1 |
gtgatgataaactgatcctatgctcccacgtggatggggtgaagttggctaagattacataaaggttataaatctcgtctttacatcattttcacataca |
100 |
Q |
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| T |
41144214 |
gtgatgataaactgatcctatgctcccacgtggatggggtgaagttggctaagattacataaaggttataaatctcgtctttacatcattttcacataca |
41144313 |
T |
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| Q |
101 |
tagtttctacaaggaaaacatgagacctatttcagcaaggccaaacacaatctagaactgcaaacactttctatgcaacatcattacaaatttacaatcc |
200 |
Q |
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| T |
41144314 |
tagttcctacaaggaaaacatgagacctatttcagcaaggccaaacacaatctagaactgcaaacactttctatgcaacatcattacaaatttacaatcc |
41144413 |
T |
|
| Q |
201 |
aaatatggggtcatttgcaccaaatatagaagaaccaaactgtctcgtgttcaaatcattgccatccaaggctgaaccaaaacgatccagccactgagtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41144414 |
aaatatggggtcatttgcaccaaatatagaagaaccaaactgtctcgtgttcaaatcattgccatccaaggctgaaccaaaacgatccagccactgagtt |
41144513 |
T |
|
| Q |
301 |
ggaggactcacagtttcattttcctctacccactcagaagtcatgtcaatatcatcaaattgaagcagatcaacttctaaagacttggcactcatctgcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41144514 |
ggaggactcacagtttcattttcctctacccactcagaagtcatgtcaatatcatcaaattgaagcagatcaacttctaaagacttggcactcatctgcc |
41144613 |
T |
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| Q |
401 |
tattcaacttgagattgtagtttatataaacaaggtcattcagtgtttctctatcaattttattcttcttctca |
474 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41144614 |
tattcaacttgagattgtagtttatataaacaaggtcattcagtgtttctctatcaattttattcttcttctca |
41144687 |
T |
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