View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10461_low_5 (Length: 423)
Name: NF10461_low_5
Description: NF10461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10461_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 21 - 417
Target Start/End: Original strand, 218058 - 218454
Alignment:
| Q |
21 |
ataagaaaattagagttgccaacttagagcctaatttaattctctgagaatatcaaatttttcaaaaaattaaattaccttttaaattggtgactccaaa |
120 |
Q |
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| T |
218058 |
ataagaaaattagagttgccaacttagagcctaatttaattctctgagaatatcaaattttttaaaaaattaaattaccttttaaattggtgactccaaa |
218157 |
T |
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| Q |
121 |
tgattttcttattggagatctatagtcattttactaattctctcaataacaacatgatattgtaggcatatacaatttgtattctttagcaagaagagat |
220 |
Q |
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| T |
218158 |
tgattttcttattggagatctatagtcattttactaattctctcaataacaacatgatattgtaggcatatacaatttgtattctttagcaagaagagat |
218257 |
T |
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| Q |
221 |
tcaaaacttttatctaatcaaaatctaaaatataaaaacttgtcggatttcatcatagcatacgtcatttaaaattaccatttatcatgtcatgactcaa |
320 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
218258 |
tctaaacttttatctaatcaaaatctaaaatataaaaacttgtcggatttcatcatagcatacgtcatttaaaattaccatttatcatgtcatgactcaa |
218357 |
T |
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| Q |
321 |
aagatcaaattgcattcctaatttggcaatgttccacatgctagaagttagtatcataaatatataaaaataaatacaatgattatcttcatctcac |
417 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
218358 |
aagatcaaattgtattcctaatttggcaatgttccacatgctagaagttagtatcataaatatataaaaataaatacaatgattatcttcatttcac |
218454 |
T |
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