View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10461_low_7 (Length: 412)

Name: NF10461_low_7
Description: NF10461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10461_low_7
NF10461_low_7
[»] chr6 (8 HSPs)
chr6 (19-408)||(13001496-13001885)
chr6 (41-212)||(10133167-10133338)
chr6 (66-202)||(5106308-5106444)
chr6 (66-211)||(34905337-34905482)
chr6 (79-212)||(445818-445951)
chr6 (66-202)||(31116158-31116294)
chr6 (104-209)||(35128795-35128900)
chr6 (66-161)||(32112751-32112846)
[»] chr2 (18 HSPs)
chr2 (66-212)||(36471872-36472018)
chr2 (79-212)||(18511256-18511389)
chr2 (31-211)||(44274236-44274415)
chr2 (66-212)||(26767795-26767941)
chr2 (66-211)||(9470082-9470227)
chr2 (41-212)||(12989191-12989362)
chr2 (79-157)||(35316448-35316526)
chr2 (104-214)||(42182887-42182997)
chr2 (133-212)||(45554567-45554646)
chr2 (41-214)||(34142148-34142321)
chr2 (77-161)||(45270601-45270685)
chr2 (80-211)||(16719478-16719609)
chr2 (41-211)||(6980129-6980299)
chr2 (79-144)||(7919317-7919382)
chr2 (66-143)||(15884498-15884575)
chr2 (66-147)||(25730473-25730554)
chr2 (71-212)||(28898075-28898217)
chr2 (66-134)||(30718361-30718429)
[»] chr7 (14 HSPs)
chr7 (79-212)||(27888282-27888415)
chr7 (28-211)||(11824072-11824253)
chr7 (28-212)||(22189939-22190123)
chr7 (61-202)||(6442175-6442316)
chr7 (79-212)||(31502511-31502644)
chr7 (77-212)||(33008104-33008239)
chr7 (79-214)||(46517291-46517424)
chr7 (114-212)||(14795131-14795229)
chr7 (114-212)||(15242123-15242221)
chr7 (66-212)||(32212904-32213049)
chr7 (41-153)||(25686844-25686956)
chr7 (104-212)||(17354599-17354707)
chr7 (77-134)||(3855855-3855912)
chr7 (104-161)||(24539195-24539252)
[»] chr8 (12 HSPs)
chr8 (61-211)||(9952786-9952936)
chr8 (79-212)||(8914771-8914904)
chr8 (79-211)||(32072098-32072230)
chr8 (66-212)||(1977207-1977353)
chr8 (28-212)||(16983394-16983578)
chr8 (79-212)||(8903852-8903985)
chr8 (41-212)||(35151738-35151909)
chr8 (109-161)||(6387612-6387664)
chr8 (66-161)||(17499267-17499362)
chr8 (78-161)||(17741573-17741656)
chr8 (103-202)||(35689490-35689589)
chr8 (104-161)||(13407396-13407453)
[»] chr4 (16 HSPs)
chr4 (79-212)||(50164395-50164528)
chr4 (41-211)||(24834579-24834749)
chr4 (28-211)||(8108957-8109140)
chr4 (28-161)||(31250878-31251012)
chr4 (66-161)||(5044574-5044669)
chr4 (79-161)||(24938462-24938544)
chr4 (61-212)||(43771126-43771277)
chr4 (79-212)||(49077249-49077382)
chr4 (41-99)||(18421840-18421898)
chr4 (28-153)||(39471216-39471341)
chr4 (47-161)||(52671881-52671995)
chr4 (104-161)||(21776917-21776974)
chr4 (121-211)||(43958152-43958242)
chr4 (41-161)||(19937181-19937301)
chr4 (176-212)||(40991733-40991769)
chr4 (109-153)||(44832522-44832566)
[»] chr3 (17 HSPs)
chr3 (66-212)||(28529253-28529397)
chr3 (41-212)||(52123965-52124136)
chr3 (66-212)||(37776737-37776883)
chr3 (28-212)||(5452058-5452240)
chr3 (79-212)||(20493492-20493625)
chr3 (66-161)||(18427184-18427279)
chr3 (77-153)||(138822-138898)
chr3 (81-197)||(26310495-26310611)
chr3 (41-212)||(41451904-41452075)
chr3 (104-202)||(46237118-46237216)
chr3 (109-161)||(13809132-13809184)
chr3 (85-161)||(22604611-22604687)
chr3 (66-148)||(46450129-46450212)
chr3 (41-212)||(24734705-24734876)
chr3 (61-203)||(10948589-10948731)
chr3 (104-210)||(27243047-27243153)
chr3 (77-161)||(19345045-19345129)
[»] chr1 (15 HSPs)
chr1 (66-148)||(931438-931520)
chr1 (66-212)||(41958085-41958229)
chr1 (66-161)||(29673526-29673621)
chr1 (77-212)||(3872679-3872813)
chr1 (41-212)||(26980271-26980442)
chr1 (66-212)||(6133659-6133804)
chr1 (104-212)||(11135739-11135847)
chr1 (104-212)||(41917995-41918103)
chr1 (79-161)||(33193101-33193183)
chr1 (104-202)||(28218120-28218218)
chr1 (71-146)||(33114037-33114112)
chr1 (66-213)||(19101635-19101782)
chr1 (79-161)||(37525580-37525662)
chr1 (41-161)||(8741232-8741352)
chr1 (43-99)||(33113984-33114040)
[»] chr5 (7 HSPs)
chr5 (45-153)||(25919270-25919378)
chr5 (66-161)||(5413771-5413866)
chr5 (41-212)||(28490731-28490902)
chr5 (79-161)||(34368411-34368493)
chr5 (79-213)||(27592499-27592633)
chr5 (173-209)||(4959422-4959458)
chr5 (79-212)||(39246608-39246741)
[»] scaffold0018 (1 HSPs)
scaffold0018 (61-161)||(27863-27963)


Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 408
Target Start/End: Complemental strand, 13001885 - 13001496
Alignment:
Q  19 tgaatgctaagtaatgcaaacgacactctcttttaaattctttcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaatt 118  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  13001885 tgaatgctaagtaatgctaacgacactctcttttaaattctctcttcaatattcactcttttattggtttaaatctttataggtttacattttgcaaatt 13001786  T
Q  119 gaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgttactagcattcataagt 218  Q
    |||||||||||||||| ||||||||||||| ||||||||||||       |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13001785 gaatccacataaaatgatgtgacatacatttattttatccaatgaaaaaatgaatgttagagagagtgctgaaaagtgagtgttactagcattcataagt 13001686  T
Q  219 tgataaaattcataagttgttcctttttctgagcaaaacaaacatgattgctgaaatgaaagcaattatttcaaacgttgaaaagggaaattgctaatgt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13001685 tgataaaattcataagttgttcctttttctgagcaaaacaaacatgattgctgaaatgaaagcaattatttcaaacgttgaaaagggaaattgctaatgt 13001586  T
Q  319 cttattaaagagttaaaatcgaagaaaaaagtaatacattctcttgacacatcttgttataaaaagttaaattttctacctatgcttctc 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13001585 cttattaaagagttaaaatcgaagaaaaaagtaatacattctcttgacacatcttgttataaaaagttaaattttctacctatgcatctc 13001496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 41 - 212
Target Start/End: Original strand, 10133167 - 10133338
Alignment:
Q  41 acactctcttttaaattctttcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtga 140  Q
    |||||||||||| ||| ||  ||| |||| ||||| ||||||||||||||||| |||| | | |||| |||| |||||||| || |||||| ||||| ||    
T  10133167 acactctcttttgaatactcactttaatactcactcttttattggtttaaatcattgtggttctacactttgaaaattgaacccccataaagtggtggga 10133266  T
Q  141 catacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgttactagcattc 212  Q
    |||||| | |||| |||||||       ||| || ||||||||||| ||||||||||||||| ||| |||||    
T  10133267 catacaataatttcatccaataaatgagtgagtgttagagagagtgttgaaaagtgagtgtttctaccattc 10133338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 66 - 202
Target Start/End: Complemental strand, 5106444 - 5106308
Alignment:
Q  66 aatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnn 165  Q
    |||||||||| | ||||||||||||||| |||| ||| |||| |||| |||||||  ||||| ||| ||||| |||||||||| ||||||||||||        
T  5106444 aatattcactctattattggtttaaatccttgtgggtgtacactttgaaaattgatcccacacaaagtggtgggacatacattgattttatccaataaaa 5106345  T
Q  166 nnntgaatgctagagagagtgctgaaaagtgagtgtt 202  Q
       ||| || |||||| |||| |||||||||||||||    
T  5106344 aagtgagtgttagagaaagtgttgaaaagtgagtgtt 5106308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 66 - 211
Target Start/End: Complemental strand, 34905482 - 34905337
Alignment:
Q  66 aatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnn 165  Q
    |||| ||||| | ||||||||||||||| |||| ||| |||| |||| |||||||| ||| | ||| ||||| |||||||||| |||| |||||||        
T  34905482 aatactcactctcttattggtttaaatcattgtgggtctacactttgaaaattgaacccaaacaaagtggtgggacatacattgatttcatccaataaaa 34905383  T
Q  166 nnntgaatgctagagagagtgctgaaaagtgagtgttactagcatt 211  Q
       ||| || ||||||||||| |||||| |||||||| ||||||||    
T  34905382 gagtgagtgttagagagagtgttgaaaaatgagtgttgctagcatt 34905337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 212
Target Start/End: Complemental strand, 445951 - 445818
Alignment:
Q  79 ttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctag 178  Q
    ||||||||||||||| ||||   | || | |||| |||||||| ||||| ||| |||||||||||||||| |||| |||||||       ||| ||||||    
T  445951 ttattggtttaaatcattgtgactctagactttgaaaattgaacccacacaaagtggtgtgacatacattgatttcatccaataaaaaagtgagtgctag 445852  T
Q  179 agagagtgctgaaaagtgagtgttactagcattc 212  Q
    ||| |||| |||||| ||||| || |||||||||    
T  445851 agatagtgttgaaaaatgagtattgctagcattc 445818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 202
Target Start/End: Original strand, 31116158 - 31116294
Alignment:
Q  66 aatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnn 165  Q
    |||| ||||| | ||||||||||||||| |||| ||||||||  ||| |||| |||  |||| ||| | ||| |||||||||| |||| |||||||        
T  31116158 aatactcactctcttattggtttaaatcattgtgggtttacacattggaaatagaacacacacaaagtagtgggacatacattgatttcatccaatagaa 31116257  T
Q  166 nnntgaatgctagagagagtgctgaaaagtgagtgtt 202  Q
       |||||| ||||||||||| | |||||||||||||    
T  31116258 gagtgaatgttagagagagtgttcaaaagtgagtgtt 31116294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 209
Target Start/End: Original strand, 35128795 - 35128900
Alignment:
Q  104 tacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgtta 203  Q
    |||| |||| |||| ||| ||||||||| ||||| |||||||||| |||||| |||||       ||| |||||||||||||| | ||||| |||||||     
T  35128795 tacactttgaaaatggaacccacataaagtggtgggacatacattgattttacccaataaaagagtgactgctagagagagtgttcaaaagagagtgttg 35128894  T
Q  204 ctagca 209  Q
    ||||||    
T  35128895 ctagca 35128900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 161
Target Start/End: Original strand, 32112751 - 32112846
Alignment:
Q  66 aatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaat 161  Q
    |||||||||| | |||||| |||||||| |||| | | |||| |||| ||||  || ||||| ||||||||||||||| |||| |||| |||||||    
T  32112751 aatattcactctcttattgttttaaatcattgtggatctacactttgaaaataaaacccacacaaaatggtgtgacatgcattgatttcatccaat 32112846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 66 - 212
Target Start/End: Original strand, 36471872 - 36472018
Alignment:
Q  66 aatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnn 165  Q
    |||| ||||| ||||||||||||||||| ||||  |||||||||||| |||||||||||| | ||| ||||| ||||||| || |||| |||||||        
T  36471872 aatactcactcttttattggtttaaatcattgtgagtttacattttgaaaattgaatccataaaaagtggtgagacatactttgatttcatccaataaga 36471971  T
Q  166 nnntgaatgctagagagagtgctgaaaagtgagtgttactagcattc 212  Q
       ||| ||  |||||||||| ||||||||||||||||||| |||||    
T  36471972 gattgagtgtcagagagagtgttgaaaagtgagtgttactatcattc 36472018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 79 - 212
Target Start/End: Original strand, 18511256 - 18511389
Alignment:
Q  79 ttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctag 178  Q
    ||||||||||||| | |||||||| | || |||| |||||||| ||||||||||| ||| |||||||||| ||||||||||||       ||| || |||    
T  18511256 ttattggtttaaaacattgtaggtcttcactttgaaaattgaacccacataaaatagtgggacatacattgattttatccaataaaagagtgagtgatag 18511355  T
Q  179 agagagtgctgaaaagtgagtgttactagcattc 212  Q
     ||||||| | ||||||||||||| |||||||||    
T  18511356 tgagagtgttaaaaagtgagtgttgctagcattc 18511389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 211
Target Start/End: Complemental strand, 44274415 - 44274236
Alignment:
Q  31 aatgcaaacgacactctcttttaaattctttcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataa 130  Q
    ||||| ||| ||||||||||||||||  | |||  || | ||||| | ||||||||||||||| |||| | | |||| |||| || ||||| ||||| ||    
T  44274415 aatgctaacaacactctcttttaaatattctctctaacactcactctgttattggtttaaatcattgtggatctacactttgaaagttgaacccacacaa 44274316  T
Q  131 aatggtgtgacatacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgttactagcatt 211  Q
    | ||||| |||||||||| ||||||||||||       |||||| |||||||||||||  |||||||||||| ||||||||    
T  44274315 agtggtgggacatacattgattttatccaatgaaagagtgaatgttagagagagtgct-caaagtgagtgttgctagcatt 44274236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 212
Target Start/End: Original strand, 26767795 - 26767941
Alignment:
Q  66 aatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnn 165  Q
    |||| ||||| ||||||||||||||||| ||||  || |||| |||| |||||||| || || ||| ||||| |||||||||| |||| ||||| |        
T  26767795 aatactcactcttttattggtttaaatcattgtgagtctacaatttgaaaattgaaccctcacaaagtggtgggacatacattgatttcatccagtaaaa 26767894  T
Q  166 nnntgaatgctagagagagtgctgaaaagtgagtgttactagcattc 212  Q
       | | ||||||||||| || ||||||||||||||| |||||||||    
T  26767895 gagtaagtgctagagagaatgttgaaaagtgagtgttgctagcattc 26767941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 66 - 211
Target Start/End: Complemental strand, 9470227 - 9470082
Alignment:
Q  66 aatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnn 165  Q
    |||||||||| | ||||||||||||||| |||| ||| |||| |||| |||||||| ||| | ||| ||||| |||||||||| |||| |||||||        
T  9470227 aatattcactctcttattggtttaaatcattgtgggtctacactttgaaaattgaacccaaacaaagtggtgggacatacattgatttcatccaataaaa 9470128  T
Q  166 nnntgaatgctagagagagtgctgaaaagtgagtgttactagcatt 211  Q
       ||| || ||||||||| | |||||| ||||| || ||||||||    
T  9470127 gagtgagtgttagagagagcgttgaaaaatgagtattgctagcatt 9470082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 12989362 - 12989191
Alignment:
Q  41 acactctcttttaaattctttcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtga 140  Q
    |||||||||||| ||  || |||  |||| ||||| | ||||||||||||||| |||| ||| |||| || | |||| ||||||| | ||| ||||| ||    
T  12989362 acactctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgggtctacacttcggaaatagaatccatacaaagtggtggga 12989263  T
Q  141 catacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgttactagcattc 212  Q
    |||||||| |||| |||||||       ||| ||  | |||||||| ||||||||||||||| |||||||||    
T  12989262 catacattgatttcatccaatgaaagagtgagtgagaaagagagtgttgaaaagtgagtgttgctagcattc 12989191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 35316448 - 35316526
Alignment:
Q  79 ttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatc 157  Q
    |||||| |||||||| |||| ||| |||| |||  |||||||||| ||||||||||||| |||||||||| ||||||||    
T  35316448 ttattgatttaaatcattgtgggtctacaatttaaaaattgaatcaacataaaatggtgggacatacattaattttatc 35316526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 214
Target Start/End: Complemental strand, 42182997 - 42182887
Alignment:
Q  104 tacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgtta 203  Q
    |||| |||| |||| ||| ||||||||| ||||| |||||||||| |||| | |||||       ||| |||||||||||||||| ||||| |||||||     
T  42182997 tacactttggaaatggaacccacataaagtggtgggacatacattgatttcacccaataaaagagtgagtgctagagagagtgctcaaaagagagtgttg 42182898  T
Q  204 ctagcattcat 214  Q
    |||||||||||    
T  42182897 ctagcattcat 42182887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 45554646 - 45554567
Alignment:
Q  133 tggtgtgacatacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgttactagcattc 212  Q
    ||||| |||||||||| |||| |||||||       ||| |||||||||||||| ||||||||||||||| |||||||||    
T  45554646 tggtgggacatacattgatttcatccaataaaagagtgagtgctagagagagtgttgaaaagtgagtgttgctagcattc 45554567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 214
Target Start/End: Original strand, 34142148 - 34142321
Alignment:
Q  41 acactctcttttaaattctttcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtga 140  Q
    |||||||||||  |||  |||||| |||||||||| | ||||||||||||| | ||||   | |||| |||| |||||||| ||||| ||| | ||| ||    
T  34142148 acactctctttagaatattttctttaatattcactctcttattggtttaaaccattgtgactctacactttgaaaattgaacccacacaaagtagtgaga 34142247  T
Q  141 catacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgttactagcattcat 214  Q
    |||||||  |||| |||||||       |||||| | |||||| || |||||||| |||||| ||| |||||||    
T  34142248 catacatgaatttcatccaataaaaaagtgaatgtttgagagattgttgaaaagtaagtgttgctaacattcat 34142321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 161
Target Start/End: Original strand, 45270601 - 45270685
Alignment:
Q  77 ttttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaat 161  Q
    ||||||||||||||||| ||||  ||||||| |||  |||| |||| |||| ||||| |||  ||||||||| ||||||||||||    
T  45270601 ttttattggtttaaatcattgtgagtttacactttcaaaatcgaattcacacaaaatagtgatacatacattaattttatccaat 45270685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 211
Target Start/End: Original strand, 16719478 - 16719609
Alignment:
Q  80 tattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctaga 179  Q
    |||||||||||||| |||  ||| ||||||||| |||||||| | |||| |||||||| || ||||||| |||| ||| |||       |   ||||| |    
T  16719478 tattggtttaaatcattgcgggtctacattttgaaaattgaacctacatgaaatggtgggatatacattgatttcatctaataaaagagtatgtgctaaa 16719577  T
Q  180 gagagtgctgaaaagtgagtgttactagcatt 211  Q
    || |||| ||||||||||||||| ||||||||    
T  16719578 gacagtgttgaaaagtgagtgttgctagcatt 16719609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 211
Target Start/End: Original strand, 6980129 - 6980299
Alignment:
Q  41 acactctcttttaaattctttcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtga 140  Q
    |||||||||||| ||  ||||||  |||| ||||| | ||||| ||| ||||| |||| ||| || | |||| ||||||||  |||| ||| ||||   |    
T  6980129 acactctcttttgaacactttctctaatactcactctcttattagttgaaatcattgtgggtctatactttgaaaattgaactcacacaaagtggtagaa 6980228  T
Q  141 catacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgttactagcatt 211  Q
    ||||| || |||| |||||||       ||| |||||||||||||| |||||||||| |||| ||||||||    
T  6980229 cataccttgatttcatccaataaaagagtgagtgctagagagagtgttgaaaagtgaatgttgctagcatt 6980299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 7919317 - 7919382
Alignment:
Q  79 ttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacata 144  Q
    ||||||||||||||| |||| | | |||| |||| |||||||||||||| ||| ||||| ||||||    
T  7919317 ttattggtttaaatcattgtggatctacactttgaaaattgaatccacacaaagtggtgggacata 7919382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 15884575 - 15884498
Alignment:
Q  66 aatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacat 143  Q
    |||| ||| ||| ||||||||||||||  |||| ||| ||||||||| |||||||| ||||| ||| ||||| |||||    
T  15884575 aatactcattatcttattggtttaaataattgtgggtctacattttgaaaattgaacccacacaaagtggtgggacat 15884498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 25730473 - 25730554
Alignment:
Q  66 aatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacat 147  Q
    |||||||||| |||||||||||||||||  |||  |||||||  ||  |||| ||| |||||||| |||||| |||||||||    
T  25730473 aatattcactcttttattggtttaaatcactgtgagtttacacgttaaaaatagaacccacataatatggtgagacatacat 25730554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 212
Target Start/End: Original strand, 28898075 - 28898217
Alignment:
Q  71 tcactattttattggtttaaatctttgtaggtt-tacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnnt 169  Q
    ||||| ||||||||| | |||||  |||||| | |||| |||| ||||  || ||||||||| ||||| |||||||||| |||| | |||||       |    
T  28898075 tcactcttttattggatgaaatcaatgtaggatctacactttggaaatgaaacccacataaagtggtgggacatacattgatttcacccaataaaagagt 28898174  T
Q  170 gaatgctagagagagtgctgaaaagtgagtgttactagcattc 212  Q
    || |||||||||||||||| ||||  ||||||| |||||||||    
T  28898175 gagtgctagagagagtgctcaaaaaagagtgttgctagcattc 28898217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 30718361 - 30718429
Alignment:
Q  66 aatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatg 134  Q
    |||||||||| ||||||||||||||||| ||||  || |||| |||| ||||  |||||||| ||||||    
T  30718361 aatattcacttttttattggtttaaatcattgtgagtctacactttgaaaatacaatccacacaaaatg 30718429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 79 - 212
Target Start/End: Complemental strand, 27888415 - 27888282
Alignment:
Q  79 ttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctag 178  Q
    ||||||||||||||| |||| ||| |||| |||  |||||||| ||||| ||| ||||| |||||||||| ||||||||||||       ||| || |||    
T  27888415 ttattggtttaaatcattgtgggtctacactttaaaaattgaacccacacaaagtggtgggacatacattgattttatccaatgagagggtgagtgttag 27888316  T
Q  179 agagagtgctgaaaagtgagtgttactagcattc 212  Q
    |||||||||| ||||||||||||| |||||||||    
T  27888315 agagagtgctcaaaagtgagtgttgctagcattc 27888282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 211
Target Start/End: Complemental strand, 11824253 - 11824072
Alignment:
Q  28 agtaatgcaaacgacactctcttttaaattctttcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccaca 127  Q
    |||||||| ||| |||||||||||| ||  || |||  |||| ||||| | |||||| |||||||| |||| |||||||| |||| |||||||| | |||    
T  11824253 agtaatgctaacaacactctcttttgaacactctct--aatactcactttcttattgatttaaatcattgtgggtttacactttgaaaattgaagctaca 11824156  T
Q  128 taaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgttactagcatt 211  Q
     ||||||||| |||||||||| |||| |||||||       ||| |||||||||||| | |||||| |||||||| ||| ||||    
T  11824155 caaaatggtgggacatacattgatttcatccaataaaagagtgagtgctagagagagcgttgaaaaatgagtgttgctaacatt 11824072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 22190123 - 22189939
Alignment:
Q  28 agtaatgcaaacgacactctcttttaaattctttcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccaca 127  Q
    |||||||| ||| |||||||||||| ||  |  |||  |||| |||||  |||||||||||||||| |||  ||| |||| |||| |||||||| |||||    
T  22190123 agtaatgctaacaacactctcttttgaacaccctctctaatactcactcgtttattggtttaaatcattgcgggtctacactttgaaaattgaacccaca 22190024  T
Q  128 taaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgttactagcattc 212  Q
     ||| ||||| | |||||||| |||| |||||||       ||| |||||||||||||| |||||| |||||||| |||||||||    
T  22190023 caaagtggtgggccatacattgatttcatccaataaaagagtgagtgctagagagagtgttgaaaaatgagtgtttctagcattc 22189939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 61 - 202
Target Start/End: Complemental strand, 6442316 - 6442175
Alignment:
Q  61 tcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaa 160  Q
    |||| |||| ||||| ||||||||||||||||| |||| ||| |||| |||| ||||||||||| || |||||||||  ||||||||| |||| || |||    
T  6442316 tctttaatactcactcttttattggtttaaatcattgtgggtctacactttgaaaattgaatccccacaaaatggtggaacatacattgatttcatacaa 6442217  T
Q  161 tnnnnnnntgaatgctagagagagtgctgaaaagtgagtgtt 202  Q
    |       ||| || ||||||||||| |||||| ||||||||    
T  6442216 taaatgactgagtgatagagagagtgttgaaaaatgagtgtt 6442175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 79 - 212
Target Start/End: Original strand, 31502511 - 31502644
Alignment:
Q  79 ttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctag 178  Q
    ||||||||||||||| ||||  || |||| |||| ||||||||  |||| ||||||||| ||||||| || |||| |||||||       ||| || |||    
T  31502511 ttattggtttaaatcattgtgagtctacactttgaaaattgaacgcacacaaaatggtgggacataccttgatttcatccaataaaagagtgagtgttag 31502610  T
Q  179 agagagtgctgaaaagtgagtgttactagcattc 212  Q
    ||||| || ||||||||||||||| |||||||||    
T  31502611 agagactgttgaaaagtgagtgttgctagcattc 31502644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 77 - 212
Target Start/End: Complemental strand, 33008239 - 33008104
Alignment:
Q  77 ttttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgct 176  Q
    ||||||||||||||||| |||| ||| ||||  ||| |||| ||| ||||| ||| ||||| |||||||| | |||| |||||||       ||| ||||    
T  33008239 ttttattggtttaaatcattgtgggtctacacattggaaatagaacccacacaaagtggtgggacatacaatgatttcatccaataaaagagtgagtgct 33008140  T
Q  177 agagagagtgctgaaaagtgagtgttactagcattc 212  Q
    ||||| |||| | ||||||||||||| |||||||||    
T  33008139 agagatagtgttcaaaagtgagtgttgctagcattc 33008104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 214
Target Start/End: Complemental strand, 46517424 - 46517291
Alignment:
Q  79 ttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctag 178  Q
    ||||||||||||||| ||||  || |||| |||| |||||||| || || | ||||||| || ||||||| ||||||||||||       ||| ||||      
T  46517424 ttattggtttaaatcattgtgagtctacactttgaaaattgaacccccacagaatggtgggatatacattgattttatccaataaatgagtgagtgct-- 46517327  T
Q  179 agagagtgctgaaaagtgagtgttactagcattcat 214  Q
    |||||||| | ||||||||||||| |||||||||||    
T  46517326 agagagtgttaaaaagtgagtgttgctagcattcat 46517291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 14795229 - 14795131
Alignment:
Q  114 aaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgttactagcattc 212  Q
    |||||||| | ||| ||| ||||| |||||||||| |||| |||||||       ||| || ||||||||||| ||||||||||||||| |||||||||    
T  14795229 aaattgaaccaacaaaaattggtgggacatacattgatttcatccaataaaaaagtgactgatagagagagtgttgaaaagtgagtgttgctagcattc 14795131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 15242221 - 15242123
Alignment:
Q  114 aaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgttactagcattc 212  Q
    |||||||| | ||| ||| ||||| |||||||||| |||| |||||||       ||| || ||||||||||| ||||||||||||||| |||||||||    
T  15242221 aaattgaaccaacaaaaattggtgggacatacattgatttcatccaataaaaaagtgactgatagagagagtgttgaaaagtgagtgttgctagcattc 15242123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 212
Target Start/End: Original strand, 32212904 - 32213049
Alignment:
Q  66 aatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnn 165  Q
    |||| ||||| | ||||||||||||||| |||| || | |||||||  ||||||||  || | ||| | ||| |||||||||| |||| |||||||        
T  32212904 aatactcactctcttattggtttaaatcattgtgggct-acattttaaaaattgaacacatacaaagtagtgagacatacattgatttcatccaataaaa 32213002  T
Q  166 nnntgaatgctagagagagtgctgaaaagtgagtgttactagcattc 212  Q
        || |||||||||||||| | |||||||||||||||||||||||    
T  32213003 gatagagtgctagagagagtgttaaaaagtgagtgttactagcattc 32213049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 153
Target Start/End: Original strand, 25686844 - 25686956
Alignment:
Q  41 acactctcttttaaa--ttctttcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgt 138  Q
    |||||||||||| ||  ||||||||  |||| ||| ||| ||||||||||||||| |||| ||| |||| |||| |||||||| ||| | ||| |||| |    
T  25686844 acactctcttttgaacattctttct--aatactcattatcttattggtttaaatcattgtgggtctacactttgaaaattgaacccataaaaagtggtat 25686941  T
Q  139 gacatacattcattt 153  Q
    |||||||||| ||||    
T  25686942 gacatacattgattt 25686956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 212
Target Start/End: Original strand, 17354599 - 17354707
Alignment:
Q  104 tacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgtta 203  Q
    |||| |||| |||| ||| ||||||||| ||||| |||||||||| |||| |||||||       ||| || ||||||||||||| ||||  |||||||     
T  17354599 tacactttggaaatagaacccacataaagtggtgggacatacattgatttcatccaataaaagaatgagtgttagagagagtgctcaaaaaagagtgttg 17354698  T
Q  204 ctagcattc 212  Q
    |||||||||    
T  17354699 ctagcattc 17354707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 3855855 - 3855912
Alignment:
Q  77 ttttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatg 134  Q
    ||||||||||||||||| |||||||| |  | |||| |||||||| ||||||||||||    
T  3855855 ttttattggtttaaatcattgtaggtctgaactttgaaaattgaacccacataaaatg 3855912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 24539195 - 24539252
Alignment:
Q  104 tacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaat 161  Q
    ||||||||| |||| ||||||| ||||| ||||| |||||| ||| ||||||||||||    
T  24539195 tacattttggaaatggaatccatataaagtggtgggacatatattgattttatccaat 24539252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 61 - 211
Target Start/End: Original strand, 9952786 - 9952936
Alignment:
Q  61 tcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaa 160  Q
    |||| |||| ||| ||| ||||||||||||||| |||| |||||||| |||| ||||||||  |||| ||| ||||| ||||| |||| |||| ||||||    
T  9952786 tcttaaatactcattatcttattggtttaaatcattgtgggtttacactttgaaaattgaactcacacaaagtggtgggacatgcattgatttcatccaa 9952885  T
Q  161 tnnnnnnntgaatgctagagagagtgctgaaaagtgagtgttactagcatt 211  Q
    |       ||| |||||||||||||| |||||||| | |||||||||||||    
T  9952886 taaaaaaatgagtgctagagagagtgttgaaaagtaaatgttactagcatt 9952936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 79 - 212
Target Start/End: Complemental strand, 8914904 - 8914771
Alignment:
Q  79 ttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctag 178  Q
    ||||||||||||||| |||| ||| |||| |||| ||| |||| ||||| ||| ||||| ||||||||||  |||||||||||       ||| || |||    
T  8914904 ttattggtttaaatcattgtgggtctacactttgaaaaatgaacccacacaaagtggtgggacatacattggttttatccaatgaaagagtgagtgttag 8914805  T
Q  179 agagagtgctgaaaagtgagtgttactagcattc 212  Q
    |||||| ||| ||||||||||||| |||||||||    
T  8914804 agagagcgctcaaaagtgagtgttgctagcattc 8914771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 211
Target Start/End: Complemental strand, 32072230 - 32072098
Alignment:
Q  79 ttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctag 178  Q
    |||||| |||||||  |||| ||| |||| |||  |||||||| ||||| ||| ||||| ||||||||||||||| |||||||       ||| ||||||    
T  32072230 ttattgatttaaataattgtgggtctacactttaaaaattgaacccacacaaagtggtgggacatacattcatttcatccaataaaagagtgagtgctag 32072131  T
Q  179 agagagtgctgaaaagtgagtgttactagcatt 211  Q
    |||||||| |||||||||| |||| ||||||||    
T  32072130 agagagtgttgaaaagtgaatgttgctagcatt 32072098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 212
Target Start/End: Original strand, 1977207 - 1977353
Alignment:
Q  66 aatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnn 165  Q
    |||| ||||| ||||||||||||||||| |||| | | |||| |||| |||||||| ||||| ||| ||||  |||||||||| |||| ||||||         
T  1977207 aatactcactcttttattggtttaaatcattgtggatctacactttgaaaattgaacccacacaaagtggttggacatacattgatttcatccaacagaa 1977306  T
Q  166 nnntgaatgctagagagagtgctgaaaagtgagtgttactagcattc 212  Q
       ||| |||||||||||||| | |||||||||| || |||||||||    
T  1977307 gagtgagtgctagagagagtgttaaaaagtgagtattgctagcattc 1977353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 16983578 - 16983394
Alignment:
Q  28 agtaatgcaaacgacactctcttttaaattctttcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccaca 127  Q
    |||||||| | | |||||||||||| ||  || |||  |||| ||||| | ||||||||||||||| ||||  || |||| |||| |||||||| || ||    
T  16983578 agtaatgctagcaacactctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgagtctacactttgaaaattgaaccccca 16983479  T
Q  128 taaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgttactagcattc 212  Q
     ||| || || |||||| | | ||||||||||||       ||| ||||||| |||||| ||||||||||||||| |||||||||    
T  16983478 caaagtgatgggacataaaatgattttatccaataaatcagtgagtgctagatagagtgttgaaaagtgagtgttgctagcattc 16983394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 212
Target Start/End: Complemental strand, 8903985 - 8903852
Alignment:
Q  79 ttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctag 178  Q
    ||||||||||||||| |||| ||| |||| |||| |||||||| | ||| ||| ||||| |||||||||| |||| ||| |||       ||| | ||||    
T  8903985 ttattggtttaaatcattgtgggtctacactttgaaaattgaaccgacacaaagtggtgggacatacattgatttcatcaaataaacaagtgagtactag 8903886  T
Q  179 agagagtgctgaaaagtgagtgttactagcattc 212  Q
    |||||||| |||||| |||||||| ||| |||||    
T  8903885 agagagtgttgaaaaatgagtgttgctaacattc 8903852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 212
Target Start/End: Original strand, 35151738 - 35151909
Alignment:
Q  41 acactctcttttaaattctttcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtga 140  Q
    |||||||||||| ||  || | || |||||||||| | ||||| |||| |||  |||| ||| |||| |||  ||||||||||| || ||||||||| ||    
T  35151738 acactctcttttgaacactctatttaatattcactttcttattagtttgaattattgtgggtctacactttaaaaattgaatccccacaaaatggtggga 35151837  T
Q  141 catacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgttactagcattc 212  Q
    |||||||| |||| |||||||       | ||||||| | |||||| | ||||||||||||| |||| ||||    
T  35151838 catacattgatttcatccaataaaagagtaaatgctaaaaagagtgttaaaaagtgagtgttgctagtattc 35151909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 6387664 - 6387612
Alignment:
Q  109 tttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaat 161  Q
    |||| |||| ||| ||||||||||||||| |||||||||| ||||||||||||    
T  6387664 tttggaaatggaacccacataaaatggtgggacatacattgattttatccaat 6387612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 161
Target Start/End: Original strand, 17499267 - 17499362
Alignment:
Q  66 aatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaat 161  Q
    |||| ||||| | ||||||||||||||| |||| | | |||| |||| |||||||| | ||| ||||||||| |||||| ||| |||| |||||||    
T  17499267 aatactcactctcttattggtttaaatcattgtggatctacactttgaaaattgaaccaacacaaaatggtgggacatatattgatttcatccaat 17499362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 17741573 - 17741656
Alignment:
Q  78 tttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaat 161  Q
    |||||||||||||| | || ||||| |||| |||| ||||||||  | || ||||||||| |||||||||| |||| |||||||    
T  17741573 tttattggtttaaaccattataggtctacactttgaaaattgaactctcacaaaatggtgggacatacattgatttcatccaat 17741656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 202
Target Start/End: Complemental strand, 35689589 - 35689490
Alignment:
Q  103 ttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgtt 202  Q
    ||||| |||| |||| |||  |||||||| ||||| |||||||||| |||| |||||||       ||| |||||||||||||||| ||||| |||||||    
T  35689589 ttacactttgaaaatggaactcacataaagtggtgggacatacattgatttcatccaataaaaaagtgagtgctagagagagtgctcaaaagagagtgtt 35689490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 13407396 - 13407453
Alignment:
Q  104 tacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaat 161  Q
    |||| |||| |||| ||| |||| |||||||||| |||||||||| ||||||||||||    
T  13407396 tacactttgaaaatagaacccacttaaaatggtgggacatacattgattttatccaat 13407453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 79 - 212
Target Start/End: Complemental strand, 50164528 - 50164395
Alignment:
Q  79 ttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctag 178  Q
    ||||||||||||||| ||||  || |||| |||| |||||||| || || ||||||||| || ||||||| ||||||||||||       ||| ||||||    
T  50164528 ttattggtttaaatcattgtgagtctacactttgaaaattgaacccccacaaaatggtgggagatacattgattttatccaataaatgagtgagtgctag 50164429  T
Q  179 agagagtgctgaaaagtgagtgttactagcattc 212  Q
    |||||||| | |||||||||||||||||| ||||    
T  50164428 agagagtgttaaaaagtgagtgttactagtattc 50164395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 41 - 211
Target Start/End: Complemental strand, 24834749 - 24834579
Alignment:
Q  41 acactctcttttaaattctttcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtga 140  Q
    ||||||||||||||| ||| |||  |||| ||||| | ||||||||||||||  |||| ||| |||| |||| |||||||| ||||| ||||||||| ||    
T  24834749 acactctcttttaaactctctctctaatagtcactctcttattggtttaaattattgtgggtctacactttgaaaattgaacccacacaaaatggtggga 24834650  T
Q  141 catacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgttactagcatt 211  Q
    |||||||| |||  |||||||       |||  | |||||||||||   ||||||||||||| ||||||||    
T  24834649 catacattgattccatccaataaaaatgtgagcgttagagagagtgtcaaaaagtgagtgttgctagcatt 24834579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 211
Target Start/End: Complemental strand, 8109140 - 8108957
Alignment:
Q  28 agtaatgcaaacgacactctcttttaaattctttcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccaca 127  Q
    |||||||| | | |||||||||||| ||  || |||  |||| ||||| | ||||||||||||||| |||| ||| |||| |||| ||||||||   |||    
T  8109140 agtaatgctagcaacactctcttttgaacactctctctaatactcactttcttattggtttaaatcattgtgggtctacactttgaaaattgaacaaaca 8109041  T
Q  128 taaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgttactagcatt 211  Q
     ||| | ||| |||||||||| |||| | |||||       ||| |||||||||||||| ||||||||||||||| ||||||||    
T  8109040 caaattagtgggacatacattgatttcacccaataaaagagtgagtgctagagagagtgttgaaaagtgagtgttgctagcatt 8108957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 161
Target Start/End: Original strand, 31250878 - 31251012
Alignment:
Q  28 agtaatgcaaacgacactctcttttaaattctttct-tcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccac 126  Q
    |||||||| | | ||||||| |||||||| || ||| | |||||| ||| |||||||| |||||||| |||| ||| ||||||||| ||||||||    |    
T  31250878 agtaatgctagcaacactctattttaaatactctctctaaatatttactcttttattgatttaaatcattgtgggtctacattttgaaaattgaacgtcc 31250977  T
Q  127 ataaaatggtgtgacatacattcattttatccaat 161  Q
    ||||||||||| |||||||||| |||| |||||||    
T  31250978 ataaaatggtgggacatacattgatttcatccaat 31251012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 161
Target Start/End: Original strand, 5044574 - 5044669
Alignment:
Q  66 aatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaat 161  Q
    |||||||| | ||||||||||||||||| |||| ||| ||||||||  ||||||||  |||| ||||| |||||||||| ||| |||| |||||||    
T  5044574 aatattcattcttttattggtttaaatcgttgtgggtctacattttaaaaattgaactcacacaaaatagtgtgacatatattgatttcatccaat 5044669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 24938462 - 24938544
Alignment:
Q  79 ttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaat 161  Q
    ||||||||||||||| |||||||| |||| |||  |||||||||||| | ||||||||| |||||||||| |||  |||||||    
T  24938462 ttattggtttaaatcattgtaggtctacactttaaaaattgaatccaaacaaaatggtgggacatacattgattacatccaat 24938544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 61 - 212
Target Start/End: Complemental strand, 43771277 - 43771126
Alignment:
Q  61 tcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaa 160  Q
    |||| |||| ||||| | ||||||||||||||| |||| ||| |||| |||| |||||||| ||||| | | ||||| |||||||||| |||| ||||||    
T  43771277 tctttaatactcactctcttattggtttaaatcattgtgggtctacactttgaaaattgaacccacacagagtggtgggacatacattgatttcatccaa 43771178  T
Q  161 tnnnnnnntgaatgctagagagagtgctgaaaagtgagtgttactagcattc 212  Q
    |       ||| |  ||||||||||| | ||||||||||||| ||| |||||    
T  43771177 taaaagagtgagtcatagagagagtgttcaaaagtgagtgttgctaccattc 43771126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 212
Target Start/End: Complemental strand, 49077382 - 49077249
Alignment:
Q  79 ttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctag 178  Q
    ||||||||||||||| |||| ||| |||| |||  |||||||| ||||| ||| ||||| |||||| ||| |||||||| |||       ||| |||||     
T  49077382 ttattggtttaaatcattgtgggtctacactttaaaaattgaacccacacaaagtggtgggacatatattaattttatctaataaaagaatgagtgctaa 49077283  T
Q  179 agagagtgctgaaaagtgagtgttactagcattc 212  Q
    ||||| || |||||| |||||||| |||||||||    
T  49077282 agagaatgttgaaaactgagtgttgctagcattc 49077249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 18421840 - 18421898
Alignment:
Q  41 acactctcttttaaattctttcttcaatattcactattttattggtttaaatctttgta 99  Q
    |||||||||||| ||| |||| || |||||||||| ||||||||||||||||| |||||    
T  18421840 acactctcttttgaatactttatttaatattcacttttttattggtttaaatcattgta 18421898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 39471341 - 39471216
Alignment:
Q  28 agtaatgcaaacgacactctcttttaaattctttcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccaca 127  Q
    |||||||| ||| |||||||||||||||   | |||  |||| ||||| | ||||||||||||||| |||| ||| |||| |||| | |||||| | |||    
T  39471341 agtaatgctaacaacactctcttttaaacattctctctaatactcactctcttattggtttaaatcattgtgggtctacactttgaagattgaaccaaca 39471242  T
Q  128 taaaatggtgtgacatacattcattt 153  Q
     ||| ||||| |||||||||| ||||    
T  39471241 caaagtggtgggacatacattgattt 39471216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 161
Target Start/End: Complemental strand, 52671995 - 52671881
Alignment:
Q  47 tcttttaaattctttcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacataca 146  Q
    |||||||||  || |||| |||| ||||||| ||||| ||||||||| |||    |||||| |||  ||||||||   ||||||||||||| ||||||||    
T  52671995 tcttttaaacactctctttaatactcactatcttattagtttaaatcattgagaatttacactttaaaaattgaacttacataaaatggtgggacataca 52671896  T
Q  147 ttcattttatccaat 161  Q
    || |||| |||||||    
T  52671895 tttatttcatccaat 52671881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 21776917 - 21776974
Alignment:
Q  104 tacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaat 161  Q
    ||||||||| ||||  |||||||||||| ||||  |||||||||| ||||||||||||    
T  21776917 tacattttggaaataaaatccacataaagtggtaggacatacattgattttatccaat 21776974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 211
Target Start/End: Complemental strand, 43958242 - 43958152
Alignment:
Q  121 atccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgttactagcatt 211  Q
    ||||||||||||||||| |||||||||| ||| ||| ||||       ||||||||||||||| || | |||| |||||||| ||| ||||    
T  43958242 atccacataaaatggtgggacatacattgattctattcaataaaagagtgaatgctagagagaatgttaaaaactgagtgttgctaacatt 43958152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 161
Target Start/End: Original strand, 19937181 - 19937301
Alignment:
Q  41 acactctcttttaaattctttcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtga 140  Q
    |||||||||||||||  || |||| |||  ||||| |||| ||||||| |||| |||| | | || | |||| |||| |||  |||||| ||||||| ||    
T  19937181 acactctcttttaaacactctctttaattctcactcttttgttggtttgaatcattgtcgatctatactttgaaaatagaactcacatataatggtggga 19937280  T
Q  141 catacattcattttatccaat 161  Q
    |||||||| ||| ||||||||    
T  19937281 catacattgattgtatccaat 19937301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 40991733 - 40991769
Alignment:
Q  176 tagagagagtgctgaaaagtgagtgttactagcattc 212  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  40991733 tagagagagtgttgaaaagtgagtgttgctagcattc 40991769  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 44832566 - 44832522
Alignment:
Q  109 tttgcaaattgaatccacataaaatggtgtgacatacattcattt 153  Q
    |||| |||| ||||||||||||||||||| |||||||||| ||||    
T  44832566 tttggaaatggaatccacataaaatggtgggacatacattaattt 44832522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 66 - 212
Target Start/End: Complemental strand, 28529397 - 28529253
Alignment:
Q  66 aatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnn 165  Q
    |||| ||||| | ||||||||||||||| |||| ||| |||| |||| |||||||| ||||| |   ||||| |||||||||| |||| |||||||        
T  28529397 aatactcactctcttattggtttaaatcattgtgggtctacactttgaaaattgaacccacacag--tggtgggacatacattgatttcatccaataaaa 28529300  T
Q  166 nnntgaatgctagagagagtgctgaaaagtgagtgttactagcattc 212  Q
       ||| |||||||||||||| ||||||||||||||| |||||||||    
T  28529299 gagtgagtgctagagagagtgttgaaaagtgagtgttgctagcattc 28529253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 212
Target Start/End: Original strand, 52123965 - 52124136
Alignment:
Q  41 acactctcttttaaattctttcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtga 140  Q
    |||||||||||| ||  || |||  |||| ||||| | ||||||||||||||| |||| ||| |||| |||| |||||||| || || ||||| ||| ||    
T  52123965 acactctcttttgaacactctctctaatactcactttcttattggtttaaatcattgtgggtctacactttgaaaattgaacccccacaaaatagtggga 52124064  T
Q  141 catacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgttactagcattc 212  Q
    |||||||| |||| ||||||        ||| |||||||||||| | | ||||||||||||| |||||||||    
T  52124065 catacattaatttcatccaacaaataagtgagtgctagagagagcgttaaaaagtgagtgttgctagcattc 52124136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 212
Target Start/End: Original strand, 37776737 - 37776883
Alignment:
Q  66 aatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnn 165  Q
    |||| ||||| | ||| ||||||||||| |||||||| |||| |||| |||||||| ||||| ||| ||||  |||||||||| |||| ||| |||        
T  37776737 aatactcactctcttagtggtttaaatcattgtaggtctacactttgaaaattgaacccacacaaagtggtaggacatacattgatttcatctaataaaa 37776836  T
Q  166 nnntgaatgctagagagagtgctgaaaagtgagtgttactagcattc 212  Q
       ||| |||| |||| |||| ||||||||||||||| |||||||||    
T  37776837 gagtgagtgctggagaaagtgttgaaaagtgagtgttgctagcattc 37776883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 5452058 - 5452240
Alignment:
Q  28 agtaatgcaaacgacactctcttttaaattctttcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccaca 127  Q
    |||||||| | | |||||||||||| ||  || ||| ||||| || || | |||||| |||||||| |||  ||| |||| || | ||||||||||||||    
T  5452058 agtaatgctagcaacactctcttttgaacactctctccaatactcgctctcttattgatttaaatccttg--ggtctacacttagaaaattgaatccaca 5452155  T
Q  128 taaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgttactagcattc 212  Q
     ||| ||||| || ||||||| |||| |||||||       |||||| || |||||||| ||||||||||||||| |||||||||    
T  5452156 caaagtggtgggaaatacattgatttcatccaataaaagagtgaatgttaaagagagtgttgaaaagtgagtgttgctagcattc 5452240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 79 - 212
Target Start/End: Original strand, 20493492 - 20493625
Alignment:
Q  79 ttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctag 178  Q
    ||||||||||||||| |||| ||| |||| |||| | |||||| || || ||| ||||  |||||||||| |||| |||||||       ||| || |||    
T  20493492 ttattggtttaaatcattgtgggtctacactttgaatattgaacccccacaaagtggtaggacatacattgatttcatccaataaatgagtgagtgttag 20493591  T
Q  179 agagagtgctgaaaagtgagtgttactagcattc 212  Q
    |||||||| ||||||||||||||| |||||||||    
T  20493592 agagagtgttgaaaagtgagtgttgctagcattc 20493625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 161
Target Start/End: Original strand, 18427184 - 18427279
Alignment:
Q  66 aatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaat 161  Q
    |||| ||||| | ||||||||||||||| |||| ||| |||| |||| |||| ||| ||||| ||||||||| |||||||||| |||| |||||||    
T  18427184 aatactcactctcttattggtttaaatcattgtgggtctacactttgaaaatagaacccacacaaaatggtgggacatacattgatttcatccaat 18427279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 138898 - 138822
Alignment:
Q  77 ttttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattt 153  Q
    |||||||| |||||||| ||||| |||||||||||  ||||||||| || | ||||||||| |||||||||| ||||    
T  138898 ttttattgatttaaatcattgtaagtttacattttaaaaattgaatacatacaaaatggtgagacatacattgattt 138822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 197
Target Start/End: Original strand, 26310495 - 26310611
Alignment:
Q  81 attggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctagag 180  Q
    ||||||||||||| || | ||| |||| |||| |||||||| | ||| ||||||||| |||||||||| |||| |||||||       | | ||||||||    
T  26310495 attggtttaaatcattatgggtctacactttgaaaattgaaccaacaaaaaatggtgggacatacattgatttcatccaataaaagagtaagtgctagag 26310594  T
Q  181 agagtgctgaaaagtga 197  Q
    |||||| ||||||||||    
T  26310595 agagtgttgaaaagtga 26310611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 212
Target Start/End: Original strand, 41451904 - 41452075
Alignment:
Q  41 acactctcttttaaattctttcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtga 140  Q
    |||||||||||| ||  || |||  |||| ||||| | ||||||||||||||| |||| ||| |||  |||| |||||||| ||||| ||| ||||| ||    
T  41451904 acactctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgggtctactctttgaaaattgaacccacacaaagtggtggga 41452003  T
Q  141 catacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgttactagcattc 212  Q
    ||||| || |||| |||||||       ||| | |||||||  ||| ||||||||||||||| |||| ||||    
T  41452004 catactttgatttcatccaataaaagagtgagtactagagattgtgttgaaaagtgagtgttgctagtattc 41452075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 202
Target Start/End: Original strand, 46237118 - 46237216
Alignment:
Q  104 tacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgtt 202  Q
    ||||||||  |||| ||| ||||||||| ||||| |||||||||| |||| |||||||       ||| |||||||||||||||| ||||| |||||||    
T  46237118 tacattttagaaatggaacccacataaagtggtgggacatacattgatttcatccaataaaagagtgattgctagagagagtgctcaaaagagagtgtt 46237216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 13809184 - 13809132
Alignment:
Q  109 tttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaat 161  Q
    |||| |||| ||| ||||||||||||||| |||||||||| ||||||||||||    
T  13809184 tttggaaatggaacccacataaaatggtgggacatacattgattttatccaat 13809132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 22604687 - 22604611
Alignment:
Q  85 gtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaat 161  Q
    ||||||||| ||||  || ||||||||| ||||||||  | || ||||||||| |||||||||| ||||||||||||    
T  22604687 gtttaaatcattgtgagtctacattttgaaaattgaactcccacaaaatggtgggacatacattaattttatccaat 22604611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 46450212 - 46450129
Alignment:
Q  66 aatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaa-tggtgtgacatacatt 148  Q
    |||| ||||| | ||||||||||||||| |||| ||| |||| ||||||||| ||| ||||| |||| ||||| ||||||||||    
T  46450212 aatactcactctcttattggtttaaatcattgtgggtctacactttgcaaatagaacccacacaaaagtggtgggacatacatt 46450129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 24734876 - 24734705
Alignment:
Q  41 acactctcttttaaattctttcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtga 140  Q
    |||||||||||| ||  || |||  |||| ||||| | ||||||||||||||| |||| ||  |||  |||| |||||||| ||||| ||| ||||| ||    
T  24734876 acactctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgggcctactctttgaaaattgaacccacacaaagtggtggga 24734777  T
Q  141 catacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgttactagcattc 212  Q
    ||||| || |||| |||||||       ||| | |||||||  ||| ||||||||||||||| |||| ||||    
T  24734776 catactttgatttcatccaataaaagagtgagtactagagattgtgttgaaaagtgagtgttgctagtattc 24734705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 203
Target Start/End: Original strand, 10948589 - 10948731
Alignment:
Q  61 tcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaa 160  Q
    |||| |||| ||||| ||||||||||||||||| |||| |||||||| |||  ||||||||   ||| ||| |||||  ||||||||| || |  |||||    
T  10948589 tctttaatactcactcttttattggtttaaatcattgtgggtttacactttaaaaattgaacaaacacaaagtggtggaacatacattaatatcgtccaa 10948688  T
Q  161 tnnnnnnntgaatgctagagagagtgctgaaaagtgagtgtta 203  Q
    |       ||| |||| |||| |||| ||||||||||||||||    
T  10948689 taaagaagtgagtgcttgagaaagtgttgaaaagtgagtgtta 10948731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 27243153 - 27243047
Alignment:
Q  104 tacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgtta 203  Q
    |||| |||| |||| ||| ||||||||| ||||| ||||| |||| ||||||||||||       ||| || ||||||||||| | ||||| |||||||     
T  27243153 tacactttggaaatggaacccacataaagtggtgggacatgcattgattttatccaataaaagagtgagtgttagagagagtgttcaaaagagagtgttg 27243054  T
Q  204 ctagcat 210  Q
    |||||||    
T  27243053 ctagcat 27243047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 161
Target Start/End: Original strand, 19345045 - 19345129
Alignment:
Q  77 ttttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaat 161  Q
    ||||||||||||||||| ||||  || |||| |||| |||||||| ||  | ||| ||||| |||||||||| |||| |||||||    
T  19345045 ttttattggtttaaatcattgtgagtctacaatttgaaaattgaaccccaacaaagtggtgggacatacattgatttcatccaat 19345129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 931520 - 931438
Alignment:
Q  66 aatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacatt 148  Q
    |||||||||| ||||||||||||||||| |||| ||| || |||||| |||||||| ||||| |||||| || ||||||||||    
T  931520 aatattcactcttttattggtttaaatcattgtgggtgtatattttgaaaattgaacccacaaaaaatgatgggacatacatt 931438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 66 - 212
Target Start/End: Complemental strand, 41958229 - 41958085
Alignment:
Q  66 aatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnn 165  Q
    |||| ||||| | |||||||||||||||  ||| ||| |||| |||| |||||||| || || ||||||||| |||||||||| |||| |||||||        
T  41958229 aatactcactctcttattggtttaaatcactgtgggtctacactttgaaaattgaacccccacaaaatggtgggacatacattgatttcatccaataaat 41958130  T
Q  166 nnntgaatgctagagagagtgctgaaaagtgagtgttactagcattc 212  Q
       ||| ||||   ||||||| |||||||||||||||||||||||||    
T  41958129 gagtgagtgct--tgagagtgttgaaaagtgagtgttactagcattc 41958085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 161
Target Start/End: Complemental strand, 29673621 - 29673526
Alignment:
Q  66 aatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaat 161  Q
    |||| ||||| ||||||||||||||||  |||||| | |||| |||| |||||||| | ||| ||||||||| |||||| ||| ||||||||||||    
T  29673621 aatactcacttttttattggtttaaataattgtagttctacactttgaaaattgaaactacacaaaatggtgggacatatattgattttatccaat 29673526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 3872679 - 3872813
Alignment:
Q  77 ttttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgct 176  Q
    |||||||||||| |||| |||| ||| |||| |||| |||||||| | ||| ||| |||||||||||| ||| |||| ||  |||       ||| ||||    
T  3872679 ttttattggtttgaatcattgtgggtctacactttggaaattgaacctacacaaagtggtgtgacatatattgattt-atttaatagaagagtgagtgct 3872777  T
Q  177 agagagagtgctgaaaagtgagtgttactagcattc 212  Q
    |||||||||| ||||||||||||||| |||||||||    
T  3872778 agagagagtgttgaaaagtgagtgttgctagcattc 3872813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 212
Target Start/End: Original strand, 26980271 - 26980442
Alignment:
Q  41 acactctcttttaaattctttcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtga 140  Q
    |||||||||||| ||  || |||  |||| ||||| | |||||| |||||||| |||| | | || |||||| ||||||||  |||| ||||||||| ||    
T  26980271 acactctcttttcaacactctctataatactcactctcttattgatttaaatcattgtggatgtatattttgaaaattgaactcacacaaaatggtggga 26980370  T
Q  141 catacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgttactagcattc 212  Q
    |||||||| |||| |||||||       ||| |  ||||||||||| |||||||||||||||  ||||||||    
T  26980371 catacattgatttcatccaataatagagtgagtattagagagagtgttgaaaagtgagtgttgttagcattc 26980442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 212
Target Start/End: Original strand, 6133659 - 6133804
Alignment:
Q  66 aatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnn 165  Q
    |||| ||||| | |||||||||||| || |||| ||| || | |||| |||||||| ||||| || |||||| |||||| ||| |||| |||||||        
T  6133659 aatactcactctcttattggtttaa-tcattgtgggtgtagactttgaaaattgaacccacacaatatggtgggacatatattgatttcatccaataaaa 6133757  T
Q  166 nnntgaatgctagagagagtgctgaaaagtgagtgttactagcattc 212  Q
       ||| ||||||||||| || ||||||||||||||| |||||||||    
T  6133758 gggtgagtgctagagagattgttgaaaagtgagtgttgctagcattc 6133804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 212
Target Start/End: Complemental strand, 11135847 - 11135739
Alignment:
Q  104 tacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgtta 203  Q
    |||| |||| |||| ||| ||||||||| ||||| |||||||||| |||| | |||||       ||| |||||||||||||||| ||||| |||||||     
T  11135847 tacactttggaaatggaacccacataaagtggtgggacatacattgatttcacccaataaaatagtgagtgctagagagagtgctcaaaagagagtgttg 11135748  T
Q  204 ctagcattc 212  Q
    |||||||||    
T  11135747 ctagcattc 11135739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 212
Target Start/End: Complemental strand, 41918103 - 41917995
Alignment:
Q  104 tacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgtta 203  Q
    |||| |||| |||| ||||||||||||| ||||| |||||||||| |||| | |||||       ||| |||||||||| ||||| ||||| |||||||     
T  41918103 tacactttgaaaatggaatccacataaagtggtgggacatacattgatttcacccaataaaagagtgagtgctagagagggtgctcaaaagagagtgttg 41918004  T
Q  204 ctagcattc 212  Q
    |||||||||    
T  41918003 ctagcattc 41917995  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 161
Target Start/End: Complemental strand, 33193183 - 33193101
Alignment:
Q  79 ttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaat 161  Q
    ||||||||||||||| |||| ||| |||| |||| |||||||| || || |||||||||  ||||||||| |||| |||||||    
T  33193183 ttattggtttaaatcattgtgggtctacactttgaaaattgaaccctcacaaaatggtggcacatacattgatttcatccaat 33193101  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 202
Target Start/End: Original strand, 28218120 - 28218218
Alignment:
Q  104 tacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgtt 202  Q
    |||| |||| |||||||||||||| ||| ||||| |||||||||| |||| |||||||       ||||||||| |||||| | |||||| ||||||||    
T  28218120 tacactttgaaaattgaatccacacaaagtggtgagacatacattgatttcatccaataaaagagtgaatgctaaagagagggttgaaaaatgagtgtt 28218218  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 33114112 - 33114037
Alignment:
Q  71 tcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacataca 146  Q
    ||||| ||||||||||||||||| || | | | |||| |||| |||||||| | ||||||||||||| ||||||||    
T  33114112 tcacttttttattggtttaaatcattctggatctacactttgaaaattgaacctacataaaatggtgggacataca 33114037  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 213
Target Start/End: Original strand, 19101635 - 19101782
Alignment:
Q  66 aatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnn 165  Q
    |||| ||||| | ||||||||||||||| ||| || | |||| |||| |||| |||  | |||||| ||||| |||||||||| |||| |||||||        
T  19101635 aatactcactttcttattggtttaaatcattgcagatctacactttgaaaatagaactcgcataaagtggtgggacatacattgatttcatccaataaaa 19101734  T
Q  166 nnntgaatgctagagagagtgctgaaaagtgagtgttactagcattca 213  Q
       ||| ||||| ||||||||   |||||||| |||| ||||||||||    
T  19101735 tagtgagtgctaaagagagtgtgcaaaagtgaatgttgctagcattca 19101782  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 161
Target Start/End: Complemental strand, 37525662 - 37525580
Alignment:
Q  79 ttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaat 161  Q
    ||||| ||||||||| |||||| | || | |||| |||||||| |||||||||||||||  ||||||||   |||||||||||    
T  37525662 ttattagtttaaatcattgtagatctagactttgaaaattgaacccacataaaatggtggaacatacatgggttttatccaat 37525580  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 161
Target Start/End: Original strand, 8741232 - 8741352
Alignment:
Q  41 acactctcttttaaattctttcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtga 140  Q
    |||||||||||| ||   |||||  |||| ||||| | ||||| ||||||||| ||||  ||||| | |||| |||||||| ||||| ||| | ||| ||    
T  8741232 acactctcttttgaacaatttctctaatactcactctcttattagtttaaatcattgtgtgtttatactttgaaaattgaacccacacaaattagtgaga 8741331  T
Q  141 catacattcattttatccaat 161  Q
    |||||||| |||| |||||||    
T  8741332 catacattgatttcatccaat 8741352  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 33113984 - 33114040
Alignment:
Q  43 actctcttttaaattctttcttcaatattcactattttattggtttaaatctttgta 99  Q
    |||||||||||||| ||||||| |||| ||||| | ||||| ||||||||| |||||    
T  33113984 actctcttttaaatactttctttaatactcactttcttattagtttaaatcattgta 33114040  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 153
Target Start/End: Complemental strand, 25919378 - 25919270
Alignment:
Q  45 tctcttttaaattctttcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacata 144  Q
    |||||||| ||| ||||||| |||||||| | ||||||||||||||||| ||||  || |||| |||| |||||||  ||||| ||||||||| ||||||    
T  25919378 tctcttttgaatactttctttaatattcatttttttattggtttaaatcattgtgagtctacactttgaaaattgatcccacacaaaatggtgagacata 25919279  T
Q  145 cattcattt 153  Q
     ||| ||||    
T  25919278 tattgattt 25919270  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 161
Target Start/End: Original strand, 5413771 - 5413866
Alignment:
Q  66 aatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaat 161  Q
    |||| ||||| ||||||||||||||||| || | ||| |||| |||| |||||||| ||||| ||| ||||| |||||||||| |||| |||||||    
T  5413771 aatactcacttttttattggtttaaatcattatgggtctacactttgtaaattgaacccacacaaagtggtgggacatacattgatttcatccaat 5413866  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 212
Target Start/End: Original strand, 28490731 - 28490902
Alignment:
Q  41 acactctcttttaaattctttcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtga 140  Q
    |||||||||||| ||  || |||  |||| ||||| | ||||||||||||||  |||| ||| |||| |||  ||||||||   ||| ||| ||||| ||    
T  28490731 acactctcttttgaacactctctctaatactcactctcttattggtttaaattattgtgggtctacactttcaaaattgaacttacacaaagtggtggga 28490830  T
Q  141 catacattcattttatccaatnnnnnnntgaatgctagagagagtgctgaaaagtgagtgttactagcattc 212  Q
    ||||| || |||| |||||||       |||||||||||||||||  |||||||||| |||| |||||||||    
T  28490831 catactttgatttcatccaataaaaaagtgaatgctagagagagttttgaaaagtgactgttgctagcattc 28490902  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 161
Target Start/End: Complemental strand, 34368493 - 34368411
Alignment:
Q  79 ttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaat 161  Q
    ||||||||||||||| |||| ||| |||| |||| ||| |||| ||||| ||| |||||  |||||||||  |||||||||||    
T  34368493 ttattggtttaaatcattgtgggtctacactttgaaaaatgaacccacacaaagtggtggaacatacattggttttatccaat 34368411  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 213
Target Start/End: Original strand, 27592499 - 27592633
Alignment:
Q  79 ttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctag 178  Q
    ||||||||||||||| ||| || | |||| |||| |||| |||  | |||||| ||||| |||||||||| |||| |||||||       ||| |||||     
T  27592499 ttattggtttaaatcattgcagatctacactttggaaatagaactcgcataaagtggtgagacatacattgatttcatccaataaaatagtgagtgctaa 27592598  T
Q  179 agagagtgctgaaaagtgagtgttactagcattca 213  Q
    ||||||||   ||||| |||||||||||| |||||    
T  27592599 agagagtgtgcaaaagcgagtgttactagaattca 27592633  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 4959422 - 4959458
Alignment:
Q  173 tgctagagagagtgctgaaaagtgagtgttactagca 209  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  4959422 tgctagagagagtgctcaaaagagagtgttactagca 4959458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 212
Target Start/End: Complemental strand, 39246741 - 39246608
Alignment:
Q  79 ttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaatnnnnnnntgaatgctag 178  Q
    |||||||||||||   |||| ||| |||| |||| ||| ||||  |||| ||| ||||| |||||||||| ||||||||||||       ||| || |||    
T  39246741 ttattggtttaaagtattgtgggtctacactttgaaaactgaactcacacaaagtggtgggacatacattgattttatccaataagaaagtgattgttag 39246642  T
Q  179 agagagtgctgaaaagtgagtgttactagcattc 212  Q
    ||||  |||| |||||||| |||| |||||||||    
T  39246641 agaggatgctcaaaagtgattgttgctagcattc 39246608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 161
Target Start/End: Complemental strand, 27963 - 27863
Alignment:
Q  61 tcttcaatattcactattttattggtttaaatctttgtaggtttacattttgcaaattgaatccacataaaatggtgtgacatacattcattttatccaa 160  Q
    |||| |||| ||||| | ||||||||||||||| |||| ||| |||| |||| |||| ||| ||||| ||| ||||| |||||||||| |||  ||||||    
T  27963 tctttaatactcactctcttattggtttaaatcattgtgggtctacactttggaaatagaacccacacaaagtggtgggacatacattgattccatccaa 27864  T
Q  161 t 161  Q
    |    
T  27863 t 27863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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