View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10461_low_8 (Length: 405)
Name: NF10461_low_8
Description: NF10461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10461_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 35135120 - 35134739
Alignment:
| Q |
1 |
aagatggatgcatgcaagatttttacgttttaattttaaataaaatgcagtacataaccaagtggtgatcgaaatgcgtgaaaagagag--gtcagagac |
98 |
Q |
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| T |
35135120 |
aagatggatgcatgcaagatttttacgttttaattttaaataaaatgcagtacataaccaagtggtgatcggaatgcgtgaaaagagagaggtcagagac |
35135021 |
T |
|
| Q |
99 |
cgtatacggaagaggaccataccatacggcttgtccgacacatccacggattccgccaacttgtggtccctacacaaactgg-acccacatggtcctccc |
197 |
Q |
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| T |
35135020 |
cgtatacggaagaggaccataccatacggcttgtccgacacatccacggattccgccaacttgtggtccctacacaaactgggacccacatggtcctccc |
35134921 |
T |
|
| Q |
198 |
atctcataaaatactgtttctgttgtgtatttctagttatagctcttttgtaaatcagttttctcaaccaaacacttccctttcatgttccttaaactca |
297 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35134920 |
atctcattaaatactgtttctgttgtgtatttctagttatagctcttttgtaaatcagttttctcaaccaaacacttccctttcatgttccttaaactca |
35134821 |
T |
|
| Q |
298 |
ccaatctgcccttaaattggcccaaccaatttgctgctattcaattctggccttgattgttagtttgatagagattcaactccagcc |
384 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
35134820 |
ccaatctgcccttaaattggcccaactaatttgctgctattcaattctggccttgatag-----ttgatagagattcaactccagcc |
35134739 |
T |
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