View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10462_high_3 (Length: 447)
Name: NF10462_high_3
Description: NF10462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10462_high_3 |
 | |
|
| [»] scaffold0257 (1 HSPs) |
| | |
|
| [»] scaffold0922 (1 HSPs) |
| | |
|
| [»] scaffold1147 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0257 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 98 - 440
Target Start/End: Complemental strand, 20020 - 19678
Alignment:
| Q |
98 |
tagtttagtagccaataggatcacttaaagcagcccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaggccaa |
197 |
Q |
| |
|
||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
20020 |
tagtttaataaccaataggatcacttaaagcaccccgagtttgtaaaatttgtgcctcttgttgagtgatgctctgcaaaacagcttcagaggaagccaa |
19921 |
T |
|
| Q |
198 |
ttgatgcttaagatccttcacatgctgcgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcg |
297 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19920 |
ttgatgcttaagatccttcacatgttgcgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcg |
19821 |
T |
|
| Q |
298 |
cgcttttccacatcatccaaccatttcttatcaaaaccacatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatcca |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
19820 |
cgcttttccacatcatccaaccatttcttatcaaaaccacatttgcgcacatcttgtagtaactcaacaaattcagagtggcttgaacctaacacatcca |
19721 |
T |
|
| Q |
398 |
acacactatgggtttggaggaatttcaatagatcagctaggca |
440 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
19720 |
acacactatgagtttggaggaatttcaatagctcagctaggca |
19678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 39)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 9 - 437
Target Start/End: Complemental strand, 28163658 - 28163230
Alignment:
| Q |
9 |
atgaaaaacagaaaaacaacccacgcaacaaataatattcaaggataaagagaagcagggaacatcttgaatgaatgcatggnnnnnnntagtttagtag |
108 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| |
|
|
| T |
28163658 |
atgaaaaacagaaaaacaacccaagcaataaataatattcaaggataaagagaagcagggaacatcttgaacgaatgtatggaaaaaaatagtttagtag |
28163559 |
T |
|
| Q |
109 |
ccaataggatcacttaaagcagcccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaggccaattgatgcttaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
28163558 |
ccaataggatcacttaaagcagcccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaagccaattgatgcttaa |
28163459 |
T |
|
| Q |
209 |
gatccttcacatgctgcgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccac |
308 |
Q |
| |
|
||||| |||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| | |
|
|
| T |
28163458 |
gatccgccacatgttgagtcaaaatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtaaaccaggcaacaaagcgcgcttttcgat |
28163359 |
T |
|
| Q |
309 |
atcatccaaccatttcttatcaaaaccacatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgg |
408 |
Q |
| |
|
|||||||||||||| ||||| ||| | || |||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28163358 |
atcatccaaccattccttatgaaatggaaatctgcgtgcatcttgtagtaactcaacaaattcagagtggcttgaacctaacacatccaacacactatga |
28163259 |
T |
|
| Q |
409 |
gtttggaggaatttcaatagatcagctag |
437 |
Q |
| |
|
|||||||||||||||||||| || ||||| |
|
|
| T |
28163258 |
gtttggaggaatttcaatagctccgctag |
28163230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 106 - 442
Target Start/End: Complemental strand, 28187571 - 28187235
Alignment:
| Q |
106 |
tagccaataggatcacttaaagcagcccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaggccaattgatgct |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
28187571 |
tagccaataggatcacttaaagcagcccgagtatgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcacaggaagccaattgatgct |
28187472 |
T |
|
| Q |
206 |
taagatccttcacatgctgcgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttc |
305 |
Q |
| |
|
||||||||| |||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| |
|
|
| T |
28187471 |
taagatcctccacatgttgtgtcaaaatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtaaaccaggcaacaaagcgcgtttttc |
28187372 |
T |
|
| Q |
306 |
cacatcatccaaccatttcttatcaaaaccacatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacacta |
405 |
Q |
| |
|
| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28187371 |
aatatcatccaaccattccttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagagtggcttgaacctaacacatccaacacacta |
28187272 |
T |
|
| Q |
406 |
tgggtttggaggaatttcaatagatcagctaggcagt |
442 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
28187271 |
tgagtttggaggaatttcaatagctcagctaggcagt |
28187235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 106 - 440
Target Start/End: Original strand, 17743726 - 17744060
Alignment:
| Q |
106 |
tagccaataggatcacttaaagcagcccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaggccaattgatgct |
205 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17743726 |
tagccaataggatcacttaaagcagctcgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaatccaattgatgct |
17743825 |
T |
|
| Q |
206 |
taagatccttcacatgctgcgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttc |
305 |
Q |
| |
|
|||||||| ||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17743826 |
taagatccatcacatgttgtgtcaaaatatgttttgagtccaacaatttttgcaatgcatcttgagagacttgtaaaccaggaaacaaagcgcgcttttc |
17743925 |
T |
|
| Q |
306 |
cacatcatccaaccatttcttatcaaaaccacatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacacta |
405 |
Q |
| |
|
||| ||||||||||||||||||||||| | || |||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
17743926 |
aacaccatccaaccatttcttatcaaaaggaaatctgcgcacatcttgtaataactcgacaaattcagagttgcttgaacctaacacatccaacacacta |
17744025 |
T |
|
| Q |
406 |
tgggtttggaggaatttcaatagatcagctaggca |
440 |
Q |
| |
|
| ||||| |||||||||||||| ||||||||||| |
|
|
| T |
17744026 |
cgagtttgaaggaatttcaatagctcagctaggca |
17744060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 106 - 440
Target Start/End: Original strand, 19045046 - 19045380
Alignment:
| Q |
106 |
tagccaataggatcacttaaagcagcccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaggccaattgatgct |
205 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19045046 |
tagccaataggatcacttaaagcagctcgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaatccaattgatgct |
19045145 |
T |
|
| Q |
206 |
taagatccttcacatgctgcgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttc |
305 |
Q |
| |
|
|||||||| ||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19045146 |
taagatccatcacatgttgtgtcaaaatatgttttgagtccaacaatttttgcaatgcatcttgagagacttgtaaaccaggaaacaaagcgcgcttttc |
19045245 |
T |
|
| Q |
306 |
cacatcatccaaccatttcttatcaaaaccacatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacacta |
405 |
Q |
| |
|
||| ||||||||||||||||||||||| | || |||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
19045246 |
aacaccatccaaccatttcttatcaaaaggaaatctgcgcacatcttgtaataactcgacaaattcagagttgcttgaacctaacacatccaacacacta |
19045345 |
T |
|
| Q |
406 |
tgggtttggaggaatttcaatagatcagctaggca |
440 |
Q |
| |
|
| ||||| |||||||||||||| ||||||||||| |
|
|
| T |
19045346 |
cgagtttgaaggaatttcaatagctcagctaggca |
19045380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 98 - 440
Target Start/End: Complemental strand, 11422143 - 11421802
Alignment:
| Q |
98 |
tagtttagtagccaataggatcacttaaagcagcccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaggccaa |
197 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||| |||||| ||||| |||||||||||| ||||||||| |||| ||||||||||| ||||| ||||| |
|
|
| T |
11422143 |
tagtttaatagccgataggatcacttaaagcagcc-gagtttctaaaaattgtgcctcctgctgagtgatgctctgtaaaacagcttcggaggaagccaa |
11422045 |
T |
|
| Q |
198 |
ttgatgcttaagatccttcacatgctgcgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcg |
297 |
Q |
| |
|
||||||||||||||||| ||| || || ||||| |||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11422044 |
ttgatgcttaagatcctccacgtgttgagtcaaaatgtattttgagttcaacaatttttgcaatgcatcttgagagacttgtaaaccaggaaacaaagcg |
11421945 |
T |
|
| Q |
298 |
cgcttttccacatcatccaaccatttcttatcaaaaccacatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatcca |
397 |
Q |
| |
|
|||||||| ||| |||||||||||| || |||||| | || | ||||||||||||| ||||||||||||| ||| | |||||||||||||| || | |
|
|
| T |
11421944 |
cgcttttcaacaccatccaaccattctttgtcaaaaggaaatctacgcacatcttgtattaactcaacaaatgtagagtttcttgaacctaacacgtcta |
11421845 |
T |
|
| Q |
398 |
acacactatgggtttggaggaatttcaatagatcagctaggca |
440 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
11421844 |
acacactatgggtctggaggaatttcaatagctcagctaggca |
11421802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 195 - 440
Target Start/End: Complemental strand, 28058008 - 28057763
Alignment:
| Q |
195 |
caattgatgcttaagatccttcacatgctgcgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaa |
294 |
Q |
| |
|
|||||||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
28058008 |
caattgatgcttaagatcctccacatgttgagtcaaaatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtaaaccaggcaacaaa |
28057909 |
T |
|
| Q |
295 |
gcgcgcttttccacatcatccaaccatttcttatcaaaaccacatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacat |
394 |
Q |
| |
|
|||| ||||| | |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28057908 |
acgcgtttttcaatatcatccaaccattccttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagagtggcttgaacctaacacat |
28057809 |
T |
|
| Q |
395 |
ccaacacactatgggtttggaggaatttcaatagatcagctaggca |
440 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
28057808 |
ccaacacactatgagtttggaggaatttcaatagctcagctaggca |
28057763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 195 - 440
Target Start/End: Complemental strand, 28068433 - 28068188
Alignment:
| Q |
195 |
caattgatgcttaagatccttcacatgctgcgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaa |
294 |
Q |
| |
|
|||||||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
28068433 |
caattgatgcttaagatcctccacatgttgagtcaaaatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtaaaccaggcaacaaa |
28068334 |
T |
|
| Q |
295 |
gcgcgcttttccacatcatccaaccatttcttatcaaaaccacatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacat |
394 |
Q |
| |
|
|||| ||||| | |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28068333 |
acgcgtttttcaatatcatccaaccattccttatcaaaaccaaatttgcgcacatcttgtaataactcaacaaattcagagtggcttgaacctaacacat |
28068234 |
T |
|
| Q |
395 |
ccaacacactatgggtttggaggaatttcaatagatcagctaggca |
440 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
28068233 |
ccaacacactatgagtttggaggaatttcaatagctcagctaggca |
28068188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 9 - 199
Target Start/End: Complemental strand, 28060408 - 28060218
Alignment:
| Q |
9 |
atgaaaaacagaaaaacaacccacgcaacaaataatattcaaggataaagagaagcagggaacatcttgaatgaatgcatggnnnnnnntagtttagtag |
108 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
28060408 |
atgaaaaacagaaaaacaacccaagcaataaataatattcaaggataaagagaagtagggaacatcttgaacgaatgcatggaaaaaaatagtttagtag |
28060309 |
T |
|
| Q |
109 |
ccaataggatcacttaaagcagcccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaggccaatt |
199 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28060308 |
ccaataggatcacataaagcagcccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaagccaatt |
28060218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 9 - 199
Target Start/End: Complemental strand, 28070833 - 28070643
Alignment:
| Q |
9 |
atgaaaaacagaaaaacaacccacgcaacaaataatattcaaggataaagagaagcagggaacatcttgaatgaatgcatggnnnnnnntagtttagtag |
108 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
28070833 |
atgaaaaacagaaaaacaacccaagcaataaataatattcaaggataaagagaagtagggaacatcttgaacgaatgcatggaaaaaaatagtttagtag |
28070734 |
T |
|
| Q |
109 |
ccaataggatcacttaaagcagcccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaggccaatt |
199 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28070733 |
ccaataggatcacataaagcagcccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaagccaatt |
28070643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 253 - 442
Target Start/End: Original strand, 8538478 - 8538667
Alignment:
| Q |
253 |
ttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccacatttgcgcacatctt |
352 |
Q |
| |
|
||||||||||||| |||||||| |||| || |||||||||||||||||||||| ||| ||||||||| | |||||||||||||||||| |||||||||| |
|
|
| T |
8538478 |
ttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcttttcaacacgatccaaccaatccttatcaaaaccacattttcgcacatctt |
8538577 |
T |
|
| Q |
353 |
gtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagt |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||| |||| |
|
|
| T |
8538578 |
gtaataactcaacaaattcagattggcttgaacctaacacatccaacacaatatgagtttggaggaatttcaatagctcagctagacagt |
8538667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 252 - 439
Target Start/End: Complemental strand, 28152418 - 28152231
Alignment:
| Q |
252 |
tttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccacatttgcgcacatct |
351 |
Q |
| |
|
|||||||||||||| |||||||| |||| || ||||||||||||||||| |||| |||||||||||||| | ||||||||| | || | ||||||||| |
|
|
| T |
28152418 |
tttttgcaatgcattttgagagaattgtaaatcaggaaacaaagcgcgcatttcaacatcatccaaccactccttatcaaacggaaatctacgcacatct |
28152319 |
T |
|
| Q |
352 |
tgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggc |
439 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||| |
|
|
| T |
28152318 |
tgtaataactcaacaaattcagagttgcttgaacctaacacatccaacacactatgagtttgaaggaatttcaatagctctgctaggc |
28152231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 253 - 442
Target Start/End: Complemental strand, 27920972 - 27920783
Alignment:
| Q |
253 |
ttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccacatttgcgcacatctt |
352 |
Q |
| |
|
||||||||||||| || ||||| |||| | || || |||||||||||||||| ||| |||||||||| | ||||||||||||||| |||||||||||| |
|
|
| T |
27920972 |
ttttgcaatgcattttcagagaattgtaattcatgagacaaagcgcgcttttcaacaccatccaaccaatctttatcaaaaccacatctgcgcacatctt |
27920873 |
T |
|
| Q |
353 |
gtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagt |
442 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||| |||||| ||||||||||||| |
|
|
| T |
27920872 |
gtaataaatcaacaaattcagagtggcttgaacctaacacatccaacgcactatgagtttggaggaatcgcaatagctcagctaggcagt |
27920783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 245 - 442
Target Start/End: Complemental strand, 27954949 - 27954752
Alignment:
| Q |
245 |
ccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccacatttgcg |
344 |
Q |
| |
|
|||||| |||||||||||||| |||||||| |||| | || | |||||||| ||||||| ||| |||||||||| | ||||||||||||||| |||| |
|
|
| T |
27954949 |
ccaacagtttttgcaatgcattttgagagaattgtaattcataagacaaagcgtgcttttcaacaccatccaaccaatctttatcaaaaccacatctgcg |
27954850 |
T |
|
| Q |
345 |
cacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagt |
442 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||| |||||| ||||||||||||| |
|
|
| T |
27954849 |
cacatcttgtaataaatcaacaaattcagagtggcttgaacctaacacatccaacgcactatgagtttggaggaatcgcaatagctcagctaggcagt |
27954752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 253 - 442
Target Start/End: Complemental strand, 28038277 - 28038088
Alignment:
| Q |
253 |
ttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccacatttgcgcacatctt |
352 |
Q |
| |
|
||||||||||||| |||||||| || | || ||||||||||||| |||||||| ||| |||| ||||| | ||||| |||| |||| |||||||||||| |
|
|
| T |
28038277 |
ttttgcaatgcattttgagagaattttaaatcaggaaacaaagcacgcttttcgacaccatcaaaccaatctttatcgaaactacatctgcgcacatctt |
28038178 |
T |
|
| Q |
353 |
gtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagt |
442 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
28038177 |
gtaacaactcaacaaattcagtgtggcttgaacctaacacatccaacacactatgcgtttggaggaatttcaatagatcgactaggcagt |
28038088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 252 - 434
Target Start/End: Complemental strand, 27777307 - 27777125
Alignment:
| Q |
252 |
tttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccacatttgcgcacatct |
351 |
Q |
| |
|
|||||| |||||| ||||||||| |||| | ||| ||||||||| || ||||| ||| |||||||||| | ||||||||||||||| |||| |||||| |
|
|
| T |
27777307 |
tttttgtaatgcaacttgagagaattgtatatcagaaaacaaagcacgtttttcaacaccatccaaccaatctttatcaaaaccacatctgcgtacatct |
27777208 |
T |
|
| Q |
352 |
tgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagc |
434 |
Q |
| |
|
|||||||||||| |||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
27777207 |
tgtaataactcatcaaactcagagcggcttgaacctaacacatccaacacactatggttttggaggaatttcaatagctcagc |
27777125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 253 - 442
Target Start/End: Complemental strand, 30994099 - 30993914
Alignment:
| Q |
253 |
ttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccacatttgcgcacatctt |
352 |
Q |
| |
|
||||||||||||| |||||||| |||| || ||||||| ||||| |||||||| ||| |||||||| | || ||||||||||| | ||| |||| |
|
|
| T |
30994099 |
ttttgcaatgcattttgagagaattgtaaatcaggaaataaagcacgcttttcgacactgtccaaccaat----attgaaaccacatttccacacttctt |
30994004 |
T |
|
| Q |
353 |
gtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggcagt |
442 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
30994003 |
ctaataactcaacaaattcagagtggcttgaacctaacacatccaacacacaatgcgtttggaggaatttcaatagatcagctagacagt |
30993914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 301 - 442
Target Start/End: Original strand, 27430393 - 27430534
Alignment:
| Q |
301 |
ttttccacatcatccaaccatttcttatcaaaaccacatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaaca |
400 |
Q |
| |
|
||||| ||| |||||||||||| |||||||||| | || | |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
27430393 |
ttttcaacaccatccaaccattccttatcaaaaggaaatctacgcacatcttgtaataactcaacaaattcagagtggcttgaacctaccacatccaaca |
27430492 |
T |
|
| Q |
401 |
cactatgggtttggaggaatttcaatagatcagctaggcagt |
442 |
Q |
| |
|
|| |||| | |||||||||||||||||| ||||||||||||| |
|
|
| T |
27430493 |
cattatgtggttggaggaatttcaatagctcagctaggcagt |
27430534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 348 - 440
Target Start/End: Original strand, 18078689 - 18078781
Alignment:
| Q |
348 |
atcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctaggca |
440 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
18078689 |
atcttgtaataactcaacaaattcagaatggcttgaacctaacacatccaacacattatgcgtttggaggaatttcaatagctcagctaggca |
18078781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 244 - 437
Target Start/End: Original strand, 26203977 - 26204170
Alignment:
| Q |
244 |
tccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccacatttgc |
343 |
Q |
| |
|
||||| ||||| ||||| |||||||| || |||||| | |||| |||||||| ||| |||| ||| |||||||||| | ||||||||||||| | || |
|
|
| T |
26203977 |
tccaataatttctgcaaggcatcttgtgatacttgtatatcagggaacaaagcccgcctttcgacaccatccaaccaatccttatcaaaaccaaagctgt |
26204076 |
T |
|
| Q |
344 |
gcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctag |
437 |
Q |
| |
|
|| |||||||||||||||| | ||||||||| ||| ||| ||||| || ||||| ||| ||||||||| ||||||||||||||| |||||||| |
|
|
| T |
26204077 |
gcgcatcttgtaataactccagaaattcagagtggaatgagcctaatacttccaatacattatgggttttgaggaatttcaatagttcagctag |
26204170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 244 - 437
Target Start/End: Original strand, 26109685 - 26109878
Alignment:
| Q |
244 |
tccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccacatttgc |
343 |
Q |
| |
|
||||| ||||| ||||| |||||||| || |||||| | |||| |||||||| ||| |||| ||| |||||||||| | ||||||||||||| | || |
|
|
| T |
26109685 |
tccaataatttctgcaaggcatcttgtgatacttgtatatcagggaacaaagcccgcctttcgacaccatccaaccaatccttatcaaaaccaaagctgt |
26109784 |
T |
|
| Q |
344 |
gcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctag |
437 |
Q |
| |
|
|| |||||||||||||||| | ||||||||| ||| ||| ||||| | ||||| | | ||||||||| ||||||||||||||| |||||||| |
|
|
| T |
26109785 |
gcgcatcttgtaataactccataaattcagagtggtatgatcctaattcttccaatatattatgggttttgaggaatttcaatagttcagctag |
26109878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 284 - 437
Target Start/End: Original strand, 28508432 - 28508585
Alignment:
| Q |
284 |
caggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccacatttgcgcacatcttgtaataactcaacaaattcagattggcttga |
383 |
Q |
| |
|
||||||||||||||||| | || ||| |||||||||| | ||||||||||||| | ||||| ||||||||| |||||| ||||||| ||| |||| || |
|
|
| T |
28508432 |
caggaaacaaagcgcgcctctcaacaccatccaaccaatccttatcaaaaccaaagctgcgcgcatcttgtattaactccacaaatttagagtggcacga |
28508531 |
T |
|
| Q |
384 |
acctaacacatccaacacactatgggtttggaggaatttcaatagatcagctag |
437 |
Q |
| |
|
|| || || ||||||| ||||||||||| |||||||||||||| |||||||| |
|
|
| T |
28508532 |
ccccaatacttccaacatactatgggtttcaaggaatttcaatagttcagctag |
28508585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 244 - 428
Target Start/End: Complemental strand, 28137091 - 28136907
Alignment:
| Q |
244 |
tccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccacatttgc |
343 |
Q |
| |
|
||||| |||||||||| || |||||||| | |||| | ||||||||| ||| ||| |||| ||| ||||||||| | ||||||||||||| | |||| |
|
|
| T |
28137091 |
tccaataatttttgcatggcgtcttgagatatttgtatatcaggaaacatagcccgcctttcgacactatccaaccaatccttatcaaaaccaaagttgc |
28136992 |
T |
|
| Q |
344 |
gcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatag |
428 |
Q |
| |
|
|| ||||| ||| || || ||||||||||| |||| ||| ||||| |||||||| |||||||| |||| |||||||||||||| |
|
|
| T |
28136991 |
gcgcatctagtagtagatccacaaattcagagtggcatgagcctaatacatccaagacactatgagtttcaaggaatttcaatag |
28136907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 437
Target Start/End: Original strand, 26138609 - 26138762
Alignment:
| Q |
284 |
caggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccacatttgcgcacatcttgtaataactcaacaaattcagattggcttga |
383 |
Q |
| |
|
||||||||||||| ||| |||| ||| |||||||||| | ||||||||||||| | | || |||||||||||||||| ||||||||||| ||| || |
|
|
| T |
26138609 |
caggaaacaaagcccgcctttcgacaccatccaaccaatccttatcaaaaccaaagcttcgtgcatcttgtaataactccacaaattcagagtggaatgt |
26138708 |
T |
|
| Q |
384 |
acctaacacatccaacacactatgggtttggaggaatttcaatagatcagctag |
437 |
Q |
| |
|
|| || || ||||| | ||||||||||| ||||||||||||||| | |||||| |
|
|
| T |
26138709 |
gcccaatacttccaatatactatgggttttgaggaatttcaatagtttagctag |
26138762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 284 - 436
Target Start/End: Original strand, 26232069 - 26232221
Alignment:
| Q |
284 |
caggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccacatttgcgcacatcttgtaataactcaacaaattcagattggcttga |
383 |
Q |
| |
|
||||| |||||| |||| |||| ||| |||||||||| | ||||||||||||| | | || |||||||||||||||| |||||||||| ||| ||| |
|
|
| T |
26232069 |
caggacacaaagtgcgcctttcgacaccatccaaccaatccttatcaaaaccaaaccttcgtgcatcttgtaataactcctcaaattcagagtggaatga |
26232168 |
T |
|
| Q |
384 |
acctaacacatccaacacactatgggtttggaggaatttcaatagatcagcta |
436 |
Q |
| |
|
|| || || |||||||||||||| |||| ||||||||||| ||| ||||||| |
|
|
| T |
26232169 |
gcccaatacttccaacacactatgagttttgaggaatttcagtagttcagcta |
26232221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 263 - 437
Target Start/End: Original strand, 26126481 - 26126655
Alignment:
| Q |
263 |
catcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccacatttgcgcacatcttgtaataactc |
362 |
Q |
| |
|
|||||||||||||||| | ||||| |||||| || | |||| ||| |||||||||| | ||||||||||||| | | || |||||||||||||||| |
|
|
| T |
26126481 |
catcttgagagacttgcatatcaggacacaaagtgctcctttcgacaccatccaaccaatccttatcaaaaccaaaccttcgtgcatcttgtaataactc |
26126580 |
T |
|
| Q |
363 |
aacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctag |
437 |
Q |
| |
|
|||||||||| ||| ||| || || || ||||||||||| ||||||| ||| |||||||| || |||||||| |
|
|
| T |
26126581 |
ctcaaattcagagtggaatgaccccaatacttccaacacactgtgggttttgagaaatttcaacagttcagctag |
26126655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 263 - 437
Target Start/End: Original strand, 26176532 - 26176706
Alignment:
| Q |
263 |
catcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccacatttgcgcacatcttgtaataactc |
362 |
Q |
| |
|
|||||||||| ||||| | ||||| |||||| || | |||| ||| |||||||||| | ||||||||||||| | | || |||||||||||||||| |
|
|
| T |
26176532 |
catcttgagaaacttgcatatcaggacacaaagtgctcctttcgacaccatccaaccaatccttatcaaaaccaaaccttcgtgcatcttgtaataactc |
26176631 |
T |
|
| Q |
363 |
aacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctag |
437 |
Q |
| |
|
|||||||||| ||| ||| || || || ||||||||||| ||||||| |||||||||||| || |||||||| |
|
|
| T |
26176632 |
ctcaaattcagagtggaatgagcccaatacttccaacacactgtgggttttgaggaatttcaacagttcagctag |
26176706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 324 - 413
Target Start/End: Original strand, 27458261 - 27458350
Alignment:
| Q |
324 |
cttatcaaaaccacatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttg |
413 |
Q |
| |
|
|||||||||| || | |||| |||||||||||||||| |||||||| ||| |||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
27458261 |
cttatcaaaagcaaagctgcgtacatcttgtaataacttaacaaatttagagcggcttgaacccaacacatcaaacacactatgggtttg |
27458350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 437
Target Start/End: Original strand, 28479269 - 28479402
Alignment:
| Q |
304 |
tccacatcatccaaccatttcttatcaaaaccacatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacac |
403 |
Q |
| |
|
|||||| |||||||||| | |||||| |||||| | ||||| |||||||||||||||| ||||||| ||| |||| | || || || |||||||||| |
|
|
| T |
28479269 |
tccacaccatccaaccaatccttatctaaaccaaagctgcgcgcatcttgtaataactccacaaatttagagtggcacggccccaatacttccaacacac |
28479368 |
T |
|
| Q |
404 |
tatgggtttggaggaatttcaatagatcagctag |
437 |
Q |
| |
|
||||||||| |||||||||||||| || ||||| |
|
|
| T |
28479369 |
tatgggtttcaaggaatttcaatagttcggctag |
28479402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 98 - 212
Target Start/End: Complemental strand, 28152614 - 28152500
Alignment:
| Q |
98 |
tagtttagtagccaataggatcacttaaagcagcccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaggccaa |
197 |
Q |
| |
|
||||||| ||||| | ||| |||||||||||||| ||||| |||||||| ||| | ||||||| |||| ||| |||| ||||||||||||| | ||| |
|
|
| T |
28152614 |
tagtttaatagccgagaggggcacttaaagcagccttagtttctaaaatttttgctttctgttgaatgatagtctccaaatcagcttcagaggatgtcaa |
28152515 |
T |
|
| Q |
198 |
ttgatgcttaagatc |
212 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
28152514 |
ttgatgcttaagatc |
28152500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 357
Target Start/End: Complemental strand, 8549753 - 8549708
Alignment:
| Q |
312 |
atccaaccatttcttatcaaaaccacatttgcgcacatcttgtaat |
357 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
8549753 |
atccaaccaatccttatcaaaaccacatttgcgcacatcttgtaat |
8549708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 221
Target Start/End: Complemental strand, 27921161 - 27921046
Alignment:
| Q |
106 |
tagccaataggatcacttaaagcagcccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaggccaattgatgct |
205 |
Q |
| |
|
||||||| ||| |||||||||||||| ||||| ||||| |||||||| || |||| |||| ||| ||||||| |||||| || | ||||||||||| |
|
|
| T |
27921161 |
tagccaagaggggcacttaaagcagccttagtttttaaaacttgtgccttcttttgaatgatagtctccaaaacatattcagaagatgtcaattgatgct |
27921062 |
T |
|
| Q |
206 |
taagatccttcacatg |
221 |
Q |
| |
|
||||||| | |||||| |
|
|
| T |
27921061 |
taagatcttccacatg |
27921046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 28680448 - 28680555
Alignment:
| Q |
114 |
aggatcacttaaagcagcccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaggccaattgatgcttaagatcc |
213 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||| ||||| | ||||||| |||| ||| ||||||||||||||| || | ||| |||||||||||||| |
|
|
| T |
28680448 |
aggagcacttaaagcagccttagtttctaaaacctgtgctttctgttgaatgatagtctccaaaacagcttcagaagatgtcaaatgatgcttaagatct |
28680547 |
T |
|
| Q |
214 |
ttcacatg |
221 |
Q |
| |
|
| |||||| |
|
|
| T |
28680548 |
tccacatg |
28680555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 336
Target Start/End: Complemental strand, 27357015 - 27356923
Alignment:
| Q |
244 |
tccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaacca |
336 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | | | | ||||||||| || |||| ||| ||||||||| | ||||||||||||| |
|
|
| T |
27357015 |
tccaacagtttttgcaatgcatcttgagagacttttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaacca |
27356923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 26126307 - 26126365
Alignment:
| Q |
152 |
cctcctgttgagtgatgttctgcaaaacagcttcagaggaggccaattgatgcttaaga |
210 |
Q |
| |
|
|||| |||||| |||| ||| ||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
26126307 |
cctcttgttgattgatactctccaaaacagcttgagaggatgccaattgatgcttaaga |
26126365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 26176358 - 26176416
Alignment:
| Q |
152 |
cctcctgttgagtgatgttctgcaaaacagcttcagaggaggccaattgatgcttaaga |
210 |
Q |
| |
|
|||| |||||| |||| ||| ||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
26176358 |
cctcttgttgattgatactctccaaaacagcttgagaggatgccaattgatgcttaaga |
26176416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 190
Target Start/End: Original strand, 27430245 - 27430335
Alignment:
| Q |
100 |
gtttagtagccaataggatcacttaaagcagcccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagagg |
190 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| || |||| | |||| ||||||| |||||| |||| ||| || |||||||| ||||| |
|
|
| T |
27430245 |
gtttaatagccaatagggtcacttaaagcagcgcgggtttctgaaatatgtgcctgttgttgaatgatactctacagaacagctttagagg |
27430335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 28137226 - 28137156
Alignment:
| Q |
151 |
gcctcctgttgagtgatgttctgcaaaacagcttcagaggaggccaattgatgcttaagatccttcacatg |
221 |
Q |
| |
|
||||| |||||| | || |||| ||||||||||| |||||| | |||||||||||||||||| | |||||| |
|
|
| T |
28137226 |
gcctcttgttgaattatattcttcaaaacagctttagaggatgtcaattgatgcttaagatcttccacatg |
28137156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 28479101 - 28479171
Alignment:
| Q |
151 |
gcctcctgttgagtgatgttctgcaaaacagcttcagaggaggccaattgatgcttaagatccttcacatg |
221 |
Q |
| |
|
||||| |||||| |||| ||| |||||||||||||||||| | |||||| ||||||||||| | |||||| |
|
|
| T |
28479101 |
gcctcttgttgaatgatagtctccaaaacagcttcagaggatgtcaattgttgcttaagatcttccacatg |
28479171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 28508237 - 28508297
Alignment:
| Q |
152 |
cctcctgttgagtgatgttctgcaaaacagcttcagaggaggccaattgatgcttaagatc |
212 |
Q |
| |
|
|||| |||||| |||| ||| |||||||||||||||||| | |||||| ||||||||||| |
|
|
| T |
28508237 |
cctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatc |
28508297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 114 - 442
Target Start/End: Complemental strand, 8021741 - 8021412
Alignment:
| Q |
114 |
aggatcacttaaagcagcccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaggccaattgatgcttaagatcc |
213 |
Q |
| |
|
|||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| | |
|
|
| T |
8021741 |
aggatcacttaaagcatcccgtgttcgtaaaatttgtgcctcctgttgagtgatgctctgcaaatcagcttcagaggaagccaattgatgcttaagatac |
8021642 |
T |
|
| Q |
214 |
ttc-acatgctgcgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatca |
312 |
Q |
| |
|
||| ||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||| | |||| |
|
|
| T |
8021641 |
ttccacacgttgtgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgcgaaccatgaaacaaagcacgcttttcgatatca |
8021542 |
T |
|
| Q |
313 |
tccaaccatttcttatcaaaaccacatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggttt |
412 |
Q |
| |
|
|||||||||| |||||||||| | | || | ||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8021541 |
tccaaccattccttatcaaaaggaaaactgtgtacatcttgtaataactcgataaattcagagaggcttgaacctaacacatccaacacactatgagttt |
8021442 |
T |
|
| Q |
413 |
ggaggaatttcaatagatcagctaggcagt |
442 |
Q |
| |
|
| |||||||||||||| || ||||| |||| |
|
|
| T |
8021441 |
gaaggaatttcaatagctcggctagacagt |
8021412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 244 - 437
Target Start/End: Complemental strand, 22400929 - 22400736
Alignment:
| Q |
244 |
tccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccacatttgc |
343 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | | | | ||||||||| || |||| ||| ||||||||| | ||||||||||||| | ||| |
|
|
| T |
22400929 |
tccaacagtttttgcaatgcatcttgagagacttttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaaccaaagctgc |
22400830 |
T |
|
| Q |
344 |
gcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctag |
437 |
Q |
| |
|
||| || |||| || || ||| |||||||| || ||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22400829 |
gcaaattgtgtagtagcttaacgaattcagagtgacttgaacctaacacatctagcacactatgggtttggaggaattgtaatagatcagctag |
22400736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 244 - 437
Target Start/End: Complemental strand, 22966106 - 22965913
Alignment:
| Q |
244 |
tccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccacatttgc |
343 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | | | | ||||||||| || |||| ||| ||||||||| | ||||||||||||| | ||| |
|
|
| T |
22966106 |
tccaacagtttttgcaatgcatcttgagagacttttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaaccaaagctgc |
22966007 |
T |
|
| Q |
344 |
gcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagctag |
437 |
Q |
| |
|
||| || |||| || || ||| |||||||| || |||||| |||||||||| | ||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
22966006 |
gcaaattgtgtagtagcttaacgaattcagaatgacttgaagctaacacatctagcacactatgggtttggaggaattgtaatagctcagctag |
22965913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 244 - 434
Target Start/End: Complemental strand, 22792633 - 22792443
Alignment:
| Q |
244 |
tccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttccacatcatccaaccatttcttatcaaaaccacatttgc |
343 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | | | | ||||||||| || |||| ||| ||||||||| | ||||||||||||| | | | |
|
|
| T |
22792633 |
tccaacagtttttgcaatgcatcttgagagacttttatatccgaaaacaaagcacgtctttcaacactatccaaccaatccttatcaaaaccaaagctac |
22792534 |
T |
|
| Q |
344 |
gcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtttggaggaatttcaatagatcagc |
434 |
Q |
| |
|
||| || |||| || || || |||||||| || ||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
22792533 |
gcaaattgtgtagtagcttaatgaattcagagtgacttgaacctaacacatccagcacactatgggtttggaggaattgtaatagctcagc |
22792443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0922 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: scaffold0922
Description:
Target: scaffold0922; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 106 - 442
Target Start/End: Complemental strand, 2650 - 2314
Alignment:
| Q |
106 |
tagccaataggatcacttaaagcagcccgagtttgtaaaatttgtgcctcctgttgagtgatgttctgcaaaacagcttcagaggaggccaattgatgct |
205 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| |||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| | |
|
|
| T |
2650 |
tagccaataggatcacttaaagcagcctgcgtttctaaaatctgtgcctcctgttgagtgatgttctgcaaaacagcttcaaaggaagccaattgatgtt |
2551 |
T |
|
| Q |
206 |
taagatccttcacatgctgcgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcgcgcttttc |
305 |
Q |
| |
|
||||||||| |||||| || ||||| ||||||||||||||||| || ||||||| |||| ||||||||||||| ||||||||||||| ||| ||||||| |
|
|
| T |
2550 |
taagatcctccacatgttgagtcaaaatgtgttttgagtccaaaaaattttgcagcgcattttgagagacttgtaaaccaggaaacaaggcgagcttttc |
2451 |
T |
|
| Q |
306 |
cacatcatccaaccatttcttatcaaaaccacatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacacta |
405 |
Q |
| |
|
||| |||||||||||| ||||||||| | || | |||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
2450 |
aacaccatccaaccattctttatcaaaaggaaatctacgcatatcttgtaatagctcaacaaattcagaatggcttgaacctaacacatccaacaggtaa |
2351 |
T |
|
| Q |
406 |
tgggtttggaggaatttcaatagatcagctaggcagt |
442 |
Q |
| |
|
|| ||||||||||||||||||| |||||||| |||| |
|
|
| T |
2350 |
tgcttttggaggaatttcaatagctcagctagacagt |
2314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1147 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold1147
Description:
Target: scaffold1147; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 198 - 417
Target Start/End: Complemental strand, 1092 - 873
Alignment:
| Q |
198 |
ttgatgcttaagatccttcacatgctgcgtcaagatgtgttttgagtccaacaatttttgcaatgcatcttgagagacttgtgaaccaggaaacaaagcg |
297 |
Q |
| |
|
||||||||||||||||| |||||| || ||||| ||||||||| ||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||| | |
|
|
| T |
1092 |
ttgatgcttaagatcctccacatgttgagtcaaaatgtgttttaagtccaacaatttttgcaatgtatctagagagacttgtaaactaggaaacaaagtg |
993 |
T |
|
| Q |
298 |
cgcttttccacatcatccaaccatttcttatcaaaaccacatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatcca |
397 |
Q |
| |
|
| ||||| ||| |||| |||| | ||| |||||| || || || |||||||||| | ||||||||| |||| ||| | |||||||||||||||||||| |
|
|
| T |
992 |
tgtttttcgacaccatctaaccgatccttgtcaaaagcaaatatgtgcacatcttggattaactcaaccaatttagagttgcttgaacctaacacatcca |
893 |
T |
|
| Q |
398 |
acacactatgggtttggagg |
417 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
892 |
acacatcatgggtttggagg |
873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 312 - 434
Target Start/End: Original strand, 8692444 - 8692566
Alignment:
| Q |
312 |
atccaaccatttcttatcaaaaccacatttgcgcacatcttgtaataactcaacaaattcagattggcttgaacctaacacatccaacacactatgggtt |
411 |
Q |
| |
|
||||||||| | ||||||||||||| | |||||| ||||| ||| || ||| ||||||||||| |||| ||||||||| |||||||| |||||||| ||| |
|
|
| T |
8692444 |
atccaaccaatccttatcaaaaccaaagttgcgcgcatctagtagtagctccacaaattcagagtggcatgaacctaatacatccaagacactatgagtt |
8692543 |
T |
|
| Q |
412 |
tggaggaatttcaatagatcagc |
434 |
Q |
| |
|
| |||||||||||||| ||||| |
|
|
| T |
8692544 |
tcaaggaatttcaatagctcagc |
8692566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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