View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10462_low_1 (Length: 775)
Name: NF10462_low_1
Description: NF10462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10462_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-154; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 378 - 694
Target Start/End: Complemental strand, 5440126 - 5439811
Alignment:
| Q |
378 |
ggaaatggtataagtaaatgtgcttttctaccttgaccctagatttctaaacattgcaaagggaaataggagagcatgttaaaaagtgcatgttgctagc |
477 |
Q |
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| T |
5440126 |
ggaaatggtataagtaaatgtgcttttctaccttgaccctagatttctaaacattgcaaagggaaataagagagcatgttgaaaagtgcatgttgctagc |
5440027 |
T |
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| Q |
478 |
attattcgactcaataaaatgtccatttattttataatctttggacatcacacaatttgtaaacttattttcacttatatttacagagatttgatcttgc |
577 |
Q |
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| T |
5440026 |
attattcaactcaataaaatgtccatttattttatg-tctttgggcatcacataatttgtaaacttattttcacttatatttacagagatttgatcttgc |
5439928 |
T |
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| Q |
578 |
atcaatggaactgaatagctcgtttcattccaatggtggatataatgaatttgactatttgaagtaagaatttatggcttaatttttacatgttccatcc |
677 |
Q |
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| T |
5439927 |
atcaatggaactgaatagctcgtttcattccaatggtggatataatgaatttgactattcgaagtaagaatttatggcttaatttttacatgttccatcc |
5439828 |
T |
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| Q |
678 |
atctatacatatatata |
694 |
Q |
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| T |
5439827 |
atctatatatatatata |
5439811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 21 - 325
Target Start/End: Complemental strand, 5440438 - 5440132
Alignment:
| Q |
21 |
ttcgcaagtacaattgagaggtgaggttcttgttttttgtgatggaagtgnnnnnnnnn--attcacctggattgaaagaagaaaatgtcttggctaaag |
118 |
Q |
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| T |
5440438 |
ttcgcaagtacaatttagaggtgaggttcttgttttttgtgatggaagtgtttttttttttattcacctggattgaaagaagaaaatgtcttggctaaag |
5440339 |
T |
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| Q |
119 |
cttctttgaacaatgttgtgcagttggtggttatacgaatggatttgaatgtttcacaaatactgagatgcttaatttagactatgggaagtggatcaat |
218 |
Q |
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| T |
5440338 |
cttctttgaacaatgttgtgcagttggtggttatacgaatggatttgaatgcttcacaaatactgagatgcttaatttagactatgggaagtggatcaat |
5440239 |
T |
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| Q |
219 |
gtacattcaaacttagacaaggtaaattaaattagcttatggttttatatgatccaaatttgaaaagctttagtggaaatatcaaatgacatatatgata |
318 |
Q |
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| T |
5440238 |
gtacattcaaacttagacaaggtaaattaaattagcttatggttttatatgatccaaatttgaaaagctttagtggaaatatcaaatgacatatatgata |
5440139 |
T |
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| Q |
319 |
tatgcat |
325 |
Q |
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| T |
5440138 |
tatgcat |
5440132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 681 - 753
Target Start/End: Complemental strand, 5439788 - 5439716
Alignment:
| Q |
681 |
tatacatatatataatgtattgtgaatttttatgaatatagtatgcatttggatgaaaatatagtgttccaac |
753 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5439788 |
tatatatatatataatgtattgtgaatttttatgaatatagtatgcatttggatgaaaatatagtgttccaac |
5439716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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