View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10462_low_2 (Length: 719)
Name: NF10462_low_2
Description: NF10462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10462_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Complemental strand, 14597529 - 14597098
Alignment:
| Q |
19 |
ggaaccggatgcatgtttaggcggtttgcattgtatggatttgaccctccctcaggtgattgggacacaaaagatcctaaacatgaatgtacggatgaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14597529 |
ggaaccggatgcatgtttaggcggtttgcattgtatggatttgaccctccctcaggtgattgggacacaaaagatcctaaacatgaatgtacggatgaag |
14597430 |
T |
|
| Q |
119 |
tctgtgaaactacaccggccttgaatgccagtgagtttgatcaagatttagattcaaacttgttgcccaagcgattcggtaattcatccatgttggctga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14597429 |
tctgtgaaactacaccggccttgaatgccagtgagtttgatcaagatttagattcaaacttgttgcccaagcgatttggtaattcatccatgttggctga |
14597330 |
T |
|
| Q |
219 |
tagcataccagtcgctgagttccaaggtcgccctcttgcagatcatcctaacgtcaggtatggacgtccaggaggtgttcttaggaaacctcgtgaacca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14597329 |
tagcataccagtcgctgagttccaaggtcgccctcttgcagatcatcctaacgtcaggtatggacgtccaggaggtgttcttaggaaacctcgtgaacca |
14597230 |
T |
|
| Q |
319 |
ctcgatgctcctacagtagcagaatctgtgtctgtcatttcttgttggtatgtatactttgtcaaacacaaacatataagtcataaaaaatatttttgta |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14597229 |
ctcgatgctcctacagtagcagaatctgtgtctgtcatttcttgttggtatgtatactttgtcaaacacaaacatataagtcataaaaaatatttttgta |
14597130 |
T |
|
| Q |
419 |
cttatatacaatattatatatgaaaagacaac |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
14597129 |
cttatatacaatattatatatgaaaagacaac |
14597098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 501 - 710
Target Start/End: Complemental strand, 14597047 - 14596838
Alignment:
| Q |
501 |
catgtaggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtgacagaagacgtggttacagggtaccgcatgcacaatcg |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
14597047 |
catgtaggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtgacagaggatgtggttacagggtaccgcatgcacaatcg |
14596948 |
T |
|
| Q |
601 |
tggatggcgttctgtatattgtgtaaccaagcgagatgcatttcgtggatcagcaccaattaatcttactgatcgactacaccaggtgctaagatgggcc |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14596947 |
tggatggcgttctgtatattgtgtaaccaagcgagatgcatttcgtggatctgcaccaattaatcttactgatcgactacaccaggtgctaagatgggcc |
14596848 |
T |
|
| Q |
701 |
acaggttctg |
710 |
Q |
| |
|
|||||||||| |
|
|
| T |
14596847 |
acaggttctg |
14596838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 501 - 710
Target Start/End: Original strand, 14611523 - 14611732
Alignment:
| Q |
501 |
catgtaggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtgacagaagacgtggttacagggtaccgcatgcacaatcg |
600 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||| || |
|
|
| T |
14611523 |
catgtaggtacgaagagaagacagaatggggagacagagtgggatggatttatggatcagtgacagaggacgtcgttacaggttaccgcatgcacaaccg |
14611622 |
T |
|
| Q |
601 |
tggatggcgttctgtatattgtgtaaccaagcgagatgcatttcgtggatcagcaccaattaatcttactgatcgactacaccaggtgctaagatgggcc |
700 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14611623 |
tggatggcgttctgtatattgcgtgaccaagcgagatgcatttcgcggatcagcaccaattaaccttactgatcgactacaccaggtgctaagatgggcc |
14611722 |
T |
|
| Q |
701 |
acaggttctg |
710 |
Q |
| |
|
|||||||||| |
|
|
| T |
14611723 |
acaggttctg |
14611732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 14610976 - 14611038
Alignment:
| Q |
19 |
ggaaccggatgcatgtttaggcggtttgcattgtatggatttgaccctccctcaggtgattgg |
81 |
Q |
| |
|
|||||||| |||||||| ||| | ||||||||||| ||||||||||||||| | ||||||||| |
|
|
| T |
14610976 |
ggaaccgggtgcatgttcaggagatttgcattgtacggatttgaccctcccacgggtgattgg |
14611038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 506 - 708
Target Start/End: Complemental strand, 15417259 - 15417057
Alignment:
| Q |
506 |
aggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtgacagaagacgtggttacagggtaccgcatgcacaatcgtggat |
605 |
Q |
| |
|
|||||||| || || |||||||||||||| ||| | || ||||||||||| |||||||||||||| || || || || ||| | |||||||| ||||||| |
|
|
| T |
15417259 |
aggtatgaggataaaacagaatggggagatagaataggttggatttatggatcagtgacagaagatgttgtaactggttacagaatgcacaaccgtggat |
15417160 |
T |
|
| Q |
606 |
ggcgttctgtatattgtgtaaccaagcgagatgcatttcgtggatcagcaccaattaatcttactgatcgactacaccaggtgctaagatgggccacagg |
705 |
Q |
| |
|
|| | || ||||||| | || || |||| || || |||||| ||||||| || ||||| || ||||| ||||||| || ||||||||||| ||||| |
|
|
| T |
15417159 |
ggagatcgatatattgcatcacaaaaagagacgctttccgtggaacagcacctataaatctcaccgatcgtttacaccaagttctaagatgggcaacagg |
15417060 |
T |
|
| Q |
706 |
ttc |
708 |
Q |
| |
|
||| |
|
|
| T |
15417059 |
ttc |
15417057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 507 - 648
Target Start/End: Complemental strand, 12192859 - 12192718
Alignment:
| Q |
507 |
ggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtgacagaagacgtggttacagggtaccgcatgcacaatcgtggatg |
606 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||| ||||||||||| ||||| || || || || || || ||||| || | ||||||||| | ||||| |
|
|
| T |
12192859 |
ggtatgaagataagaccgaatggggagatagagttggatggatttacgggtcggtaaccgaggatgttgtgacaggttatagaatgcacaatagaggatg |
12192760 |
T |
|
| Q |
607 |
gcgttctgtatattgtgtaaccaagcgagatgcatttcgtgg |
648 |
Q |
| |
|
| | ||||| |||||||| |||||| | ||||| || ||||| |
|
|
| T |
12192759 |
gaggtctgtgtattgtgtgaccaagagggatgccttccgtgg |
12192718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University