View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10462_low_3 (Length: 448)
Name: NF10462_low_3
Description: NF10462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10462_low_3 |
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| [»] scaffold0302 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 29 - 432
Target Start/End: Original strand, 1236463 - 1236867
Alignment:
| Q |
29 |
cacagagctcgcaaaaagagtgcaacagctacaaaaacagaactttgcagacctgcattatctacatcaaaacctagatattcaattgtcatccatctgt |
128 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1236463 |
cacaaagctcgcaaaaagagtgcaacagctacaaaaacagaactttgcagacctgcattatctacatcaaaacctagatattcaattgtcatccatctgt |
1236562 |
T |
|
| Q |
129 |
gatccttcatttattaacaagtcagctatttgattggcttccttttttatatgaacaaagccgacatccatcaaactctacatgttttttcattttgttg |
228 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1236563 |
gatccttcatttattaacaagtcggctatttgattggcttccttttttatatgaacaaagcccacatccatcaaactctacatgttttttcattttgttg |
1236662 |
T |
|
| Q |
229 |
ctcaagaatctcagattaaatggacacccatcactacgccccacccaatgttaagcattttaatgtccaattctgtactaatctaataacctttcaacca |
328 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1236663 |
ctcaagaatttcagattaaatggacacccatcactacgccccacccaatgttaagcattttaatgtccaattctgtactaatctaataacctttcaacca |
1236762 |
T |
|
| Q |
329 |
atattttctgctgaaaggacaactagactgcaaaaacaa-tgccttaaactcagattcatttgagccttttaaaccaattgatgttgcaaacatcggctt |
427 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1236763 |
atattttctgctgaaaggacaactagactgcaaaaacaattgccttaaactcagattcatttgagccttttaaaccaattgatgttgcaaacatcggctt |
1236862 |
T |
|
| Q |
428 |
catct |
432 |
Q |
| |
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||||| |
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| T |
1236863 |
catct |
1236867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 60 - 432
Target Start/End: Complemental strand, 1183244 - 1182888
Alignment:
| Q |
60 |
caaaaacagaactttgcagacctgcattatctacatcaaaacctagatattcaattgtcatccatctgtgatccttcatttattaacaagtcagctattt |
159 |
Q |
| |
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|||||||||||||| |||||||| ||||||||| |||||||||||||||||| |||| ||||| | | ||| ||| | || |||| |||| | ||||| |
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| T |
1183244 |
caaaaacagaacttagcagacctacattatctatatcaaaacctagatattctattgccatccgtttatgaccctactattgctaactagtcggttattt |
1183145 |
T |
|
| Q |
160 |
gattggcttccttttttatatgaacaaagccgacatccatcaaactctacatgttttttcattttgttgctcaagaatctcagattaaatggacacccat |
259 |
Q |
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|||| |||||| | ||||||||||||||||| | ||||| |||||||| ||| |||||||||||||||||||||||||| | |||| |||||||||||| |
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| T |
1183144 |
gattagcttccctatttatatgaacaaagcccatatccaccaaactctgcat--tttttcattttgttgctcaagaatcttatattacatggacacccat |
1183047 |
T |
|
| Q |
260 |
cactacgccccacccaatgttaagcattttaatgtccaattctgtactaatctaataacctttcaaccaatattttctgctgaaaggacaactagactgc |
359 |
Q |
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|||||| ||||||||||||| |||||||| |||| || | |||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
1183046 |
cactacaccccacccaatgt---------------ccaattctatacttctcctacaacctttcaaccaatattttcttttgaaaggaccgctagactgc |
1182962 |
T |
|
| Q |
360 |
aaaaacaat-gccttaaactcagattcatttgagccttttaaaccaattgatgttgcaaacatcggcttcatct |
432 |
Q |
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||||| ||| ||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
1182961 |
aaaaagaattgccttaaactcagattcgtttgagtcttttaaaccaattgatgttacaaacatcggcttcatct |
1182888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 277 - 405
Target Start/End: Complemental strand, 897730 - 897601
Alignment:
| Q |
277 |
tgttaagcattttaatgtccaattctgtactaatctaataacctttcaaccaatattttctgctgaaaggacaactagactgcaaaaacaa-tgccttaa |
375 |
Q |
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||||||||||||| |||||||||||| |||| |||| | ||||||||||||||||||||||| |||||||| ||||| ||||||||||||| || ||||| |
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| T |
897730 |
tgttaagcattttcatgtccaattctatacttatcttacaacctttcaaccaatattttctgttgaaaggaaaactaaactgcaaaaacaattgtcttaa |
897631 |
T |
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| Q |
376 |
actcagattcatttgagccttttaaaccaa |
405 |
Q |
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||||||||| ||||||| |||||||||||| |
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| T |
897630 |
actcagatttatttgagtcttttaaaccaa |
897601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 298 - 432
Target Start/End: Complemental strand, 1193956 - 1193821
Alignment:
| Q |
298 |
attctgtactaatctaataacctttcaaccaatattttctgctgaaaggacaactagactgcaaaaacaat-gccttaaactcagattcatttgagcctt |
396 |
Q |
| |
|
||||| |||| |||| | ||||||||||||||||||||||| |||| |||||| || |||||||||||||| |||||||| | |||||||||| || ||| |
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| T |
1193956 |
attctatacttatcttacaacctttcaaccaatattttctgttgaatggacaattaaactgcaaaaacaatagccttaaattaagattcattttagtctt |
1193857 |
T |
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| Q |
397 |
ttaaaccaattgatgttgcaaacatcggcttcatct |
432 |
Q |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
1193856 |
ttaacccaattgatgttgcaaacatcggcttcatct |
1193821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 175
Target Start/End: Complemental strand, 1194111 - 1193974
Alignment:
| Q |
38 |
cgcaaaaagagtgcaacagctacaaaaacagaactttgcagacctgcattatctacatcaaaacctagatattcaattgtcatccatctgtgatccttca |
137 |
Q |
| |
|
|||||||| | ||||||||||||||||| |||||| ||||| ||||||||||||||| | ||| ||||||| ||| || |||| ||||||| | | |
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| T |
1194111 |
cgcaaaaatactgcaacagctacaaaaatagaactcggcagaactgcattatctacatagacgcctggatattctgttgccacccatttgtgatcatact |
1194012 |
T |
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| Q |
138 |
tttattaacaagtcagctatttgattggcttccttttt |
175 |
Q |
| |
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||| |||||||| ||||||||||| ||||||||||| |
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| T |
1194011 |
tttgctaacaagttggctatttgatttgcttccttttt |
1193974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 62 - 276
Target Start/End: Complemental strand, 20405 - 20191
Alignment:
| Q |
62 |
aaaacagaactttgcagacctgcattatctacatcaaaacctagatattcaattgtcatccatctgtgatccttcatttattaacaagtcagctatttga |
161 |
Q |
| |
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||||||||||| |||||||||||||||| |||| |||||||||||||| |||| |||| | || ||||| | |||| |||| |||| | ||||||| |
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| T |
20405 |
aaaacagaactcggcagacctgcattatccacattgaaacctagatattctattgccatcagttcgtaatcctacttttactaacgagtcggttatttga |
20306 |
T |
|
| Q |
162 |
ttggcttccttttttatatgaacaaagccgacatccatcaaactctacatgttttttcattttgttgctcaagaatctcagattaaatggacacccatca |
261 |
Q |
| |
|
|| |||||||| |||| || ||||||| | |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
20305 |
ttagcttccttgtttaaattaacaaagaccacatccatcaaactctgcatgtttttacattttgttgctcaagaatctcagattaaatgaacacccatca |
20206 |
T |
|
| Q |
262 |
ctacgccccacccaa |
276 |
Q |
| |
|
|||| |||||||||| |
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|
| T |
20205 |
ctacaccccacccaa |
20191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 316 - 432
Target Start/End: Complemental strand, 20184 - 20068
Alignment:
| Q |
316 |
aacctttcaaccaatattttctgctgaaaggacaactagactgcaaaaacaat-gccttaaactcagattcatttgagccttttaaaccaattgatgttg |
414 |
Q |
| |
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||||||||||||||||||| | |||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
20184 |
aacctttcaaccaatatttattt-tgaaaggaaaactagactgcaaaaacaattgccttaaactcagattcatttgagtcttttaaaccaattgatgtca |
20086 |
T |
|
| Q |
415 |
caaacatcggcttcatct |
432 |
Q |
| |
|
|||||||| ||||||||| |
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|
| T |
20085 |
caaacatcagcttcatct |
20068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 432
Target Start/End: Original strand, 20256862 - 20256918
Alignment:
| Q |
376 |
actcagattcatttgagccttttaaaccaattgatgttgcaaacatcggcttcatct |
432 |
Q |
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||||||||||||||||| ||||||| ||||||||||| |||||||| || |||||| |
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| T |
20256862 |
actcagattcatttgagtcttttaagccaattgatgtcccaaacatcagcctcatct |
20256918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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