View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10462_low_5 (Length: 420)

Name: NF10462_low_5
Description: NF10462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10462_low_5
NF10462_low_5
[»] chr1 (3 HSPs)
chr1 (19-258)||(1718061-1718300)
chr1 (256-403)||(1718331-1718478)
chr1 (76-122)||(38483819-38483865)
[»] chr3 (15 HSPs)
chr3 (25-129)||(26647851-26647955)
chr3 (31-126)||(26654001-26654096)
chr3 (55-129)||(20033501-20033575)
chr3 (52-128)||(19951998-19952074)
chr3 (31-122)||(20015375-20015466)
chr3 (19-121)||(20007447-20007549)
chr3 (53-107)||(19849871-19849925)
chr3 (71-129)||(20006421-20006479)
chr3 (347-403)||(20007033-20007089)
chr3 (52-129)||(20035770-20035847)
chr3 (131-258)||(26648113-26648243)
chr3 (52-121)||(19813157-19813226)
chr3 (65-129)||(19956971-19957035)
chr3 (347-399)||(17115339-17115391)
chr3 (200-256)||(19952284-19952340)
[»] chr5 (3 HSPs)
chr5 (45-129)||(26354094-26354178)
chr5 (52-122)||(9815908-9815978)
chr5 (71-121)||(27472660-27472710)
[»] chr8 (1 HSPs)
chr8 (55-129)||(22685507-22685581)
[»] chr7 (2 HSPs)
chr7 (53-117)||(12582137-12582201)
chr7 (53-117)||(12521888-12521952)
[»] scaffold0038 (1 HSPs)
scaffold0038 (81-120)||(19562-19601)
[»] chr6 (1 HSPs)
chr6 (81-120)||(28219064-28219103)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 1718061 - 1718300
Alignment:
Q  19 agagacgtgcatgttcaacgaaacctagagctgatgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgt 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1718061 agagatgtgcatgttcaacgaaacctagagctgatgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgt 1718160  T
Q  119 tgacactcttaggtacaaatgtggtggcataatccatgaatctaagcatttaaataaccaatgttcgtcatctttagctggttataaaaagatattacca 218  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1718161 tgacactcttaggtacaagtgtggtggcataatccatgaatctaagcatttaaataaccaatgttcgtcatctttagctggttatgaaaagatattacca 1718260  T
Q  219 ctgaagaggtcaatttcaaaagataacatcgaactttcaa 258  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1718261 ctgaagaggtcaatttcaaaagataacatcgaactttcaa 1718300  T

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Target: chr1; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 256 - 403
Target Start/End: Original strand, 1718331 - 1718478
Alignment:
Q  256 caaatgggagagaagaagcaagatgcaaaaacttttctatcagnnnnnnngttgctccgaacaacaatgtaactgctgcgcagcaatattctcagtttca 355  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1718331 caaatgggagagaagaagcaagatgcaaaaacttttctatcagaaaaaaagttactccgaacaacaatgtaactgctgcgcagcaatattctcagtttca 1718430  T
Q  356 ctcggatatggctgctcaagcagacgctaaagaaacagctgaagaaaa 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1718431 ctcggatatggctgctcaagcagacgctaaagaaacagctgaagaaaa 1718478  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 38483819 - 38483865
Alignment:
Q  76 gtaatgatgttggtgttccacctggatttcctcccaatcttgttgac 122  Q
    |||||||||||||||||||||||| |||||||||  |||||||||||    
T  38483819 gtaatgatgttggtgttccacctgaatttcctccagatcttgttgac 38483865  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 26647851 - 26647955
Alignment:
Q  25 gtgcatgttcaacgaaacctagagctgatgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacac 124  Q
    ||||| |||||| ||||| ||||| |  ||||||||||| ||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  26647851 gtgcaagttcaaggaaacatagagtttgtgtaggaaaagataacataagtggtaatgatgttggtgttccccctggttttcctcccaatcttgttgacac 26647950  T
Q  125 tctta 129  Q
    |||||    
T  26647951 tctta 26647955  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 26654001 - 26654096
Alignment:
Q  31 gttcaacgaaacctagagctgatgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactc 126  Q
    |||||| ||||||||||||| ||||||| ||||||| ||||||||||   ||| || |||||||||||||||||||||||||||||||||||||||    
T  26654001 gttcaaggaaacctagagctcatgtagggaaagctagcaaaagtggtgtcgattttagtgttccacctggatttcctcccaatcttgttgacactc 26654096  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 20033575 - 20033501
Alignment:
Q  55 taggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactctta 129  Q
    ||||||| |||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  20033575 taggaaatgctaacgaaagtagtaatgatgatggtgttgcacctggatttcctcccaatcttgttgacactctta 20033501  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 19951998 - 19952074
Alignment:
Q  52 atgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactctt 128  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||  |||||| ||||||    
T  19951998 atgtaggaaaagctaacataagtggtaatgttgttggtgttccacctggatttcctaccaattgtgttgaaactctt 19952074  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 20015466 - 20015375
Alignment:
Q  31 gttcaacgaaacctagagctgatgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgac 122  Q
    |||||| ||||| |||| || || |||||||| |||||| |||  |||||||||||||||||||||||||||||  ||||||||||||||||    
T  20015466 gttcaaggaaacatagacctcatctaggaaaaactaacagaagcagtaatgatgttggtgttccacctggattttgtcccaatcttgttgac 20015375  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 20007549 - 20007447
Alignment:
Q  19 agagacgtgcatgttcaacgaaacctagagctgatgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgt 118  Q
    ||||| |||||  ||||| || || |||| || |||||||| || |||||| |||| | | |||||||||||||||||||||||||||||||||||||||    
T  20007549 agagaagtgcaatttcaaggagacatagatctcatgtaggacaatctaacagaagttggattgatgttggtgttccacctggatttcctcccaatcttgt 20007450  T
Q  119 tga 121  Q
    |||    
T  20007449 tga 20007447  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 19849871 - 19849925
Alignment:
Q  53 tgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcct 107  Q
    ||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||    
T  19849871 tgtaggaaaagctaacagaagtggtaatgatgttggttttccacttggatttcct 19849925  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 20006479 - 20006421
Alignment:
Q  71 aagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactctta 129  Q
    |||||||| ||||||||||||||||  ||||||||||||||||||||||| ||||||||    
T  20006479 aagtggtattgatgttggtgttccagatggatttcctcccaatcttgttggcactctta 20006421  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 20007089 - 20007033
Alignment:
Q  347 tcagtttcactcggatatggctgctcaagcagacgctaaagaaacagctgaagaaaa 403  Q
    |||||||||||| |||||||||||||||||||| ||||||||||| | |||||||||    
T  20007089 tcagtttcactctgatatggctgctcaagcagaagctaaagaaacggttgaagaaaa 20007033  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 20035847 - 20035770
Alignment:
Q  52 atgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactctta 129  Q
    |||||||||||   ||||||||||||| ||| ||| ||||||  ||||||||| |||||||||||||||| |||||||    
T  20035847 atgtaggaaaattaaacaaaagtggtattgaagtttgtgttcagcctggattttctcccaatcttgttgatactctta 20035770  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 258
Target Start/End: Original strand, 26648113 - 26648243
Alignment:
Q  131 gtacaaatgtggtggcataatccatgaatctaagcatttaaataaccaa---tgttcgtcatctttagctggttataaaaagatattaccactgaagagg 227  Q
    |||||| |||||||||| ||||||||||||||||||||||    |||||   |||||  | |||| |||   |||| ||||||||||||||||||| |||    
T  26648113 gtacaagtgtggtggcaaaatccatgaatctaagcatttattggaccaaagttgttcagcctcttcagcatattatgaaaagatattaccactgaaaagg 26648212  T
Q  228 tcaatttcaaaagataacatcgaactttcaa 258  Q
     || |||||  ||||||||| ||||||||||    
T  26648213 ccagtttcagtagataacattgaactttcaa 26648243  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 121
Target Start/End: Original strand, 19813157 - 19813226
Alignment:
Q  52 atgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttga 121  Q
    |||||||||||  | ||| |||||||| || || || ||||||||||| |||||||||||||||||||||    
T  19813157 atgtaggaaaatttgacagaagtggtattggtgctgctgttccacctgaatttcctcccaatcttgttga 19813226  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 19956971 - 19957035
Alignment:
Q  65 taacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactctta 129  Q
    ||||| ||||||||  || ||| |||||| |||||||||| |||||||||||||||| |||||||    
T  19956971 taacagaagtggtatggaggtttgtgttcaacctggattttctcccaatcttgttgatactctta 19957035  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 399
Target Start/End: Original strand, 17115339 - 17115391
Alignment:
Q  347 tcagtttcactcggatatggctgctcaagcagacgctaaagaaacagctgaag 399  Q
    |||||||||||| |||||||||||| ||||||| ||||  ||||||| |||||    
T  17115339 tcagtttcactccgatatggctgctaaagcagaagctatggaaacagttgaag 17115391  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 19952284 - 19952340
Alignment:
Q  200 ttataaaaagatattaccactgaagaggtcaatttcaaaagataacatcgaactttc 256  Q
    |||| ||||||||||||||||||| ||| || |||| ||||||| ||| ||||||||    
T  19952284 ttatgaaaagatattaccactgaaaaggccagtttcgaaagatagcattgaactttc 19952340  T

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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 26354178 - 26354094
Alignment:
Q  45 agagctgatgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactctta 129  Q
    |||||| |||| |||||| |||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26354178 agagctcatgttggaaaaactaacagaagtattaatgatgttggtgttccacctggatttcctcccaatcttgttgacattctta 26354094  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 52 - 122
Target Start/End: Original strand, 9815908 - 9815978
Alignment:
Q  52 atgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgac 122  Q
    |||||||||||  | ||| |||| |||||||||||||| ||||||||| ||||||||||||||||||||||    
T  9815908 atgtaggaaaaattgacagaagttgtaatgatgttggttttccacctgaatttcctcccaatcttgttgac 9815978  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 27472660 - 27472710
Alignment:
Q  71 aagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttga 121  Q
    |||||||||||||||||||||||||| |||||| |||  |||| |||||||    
T  27472660 aagtggtaatgatgttggtgttccacttggattccctttcaatgttgttga 27472710  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 22685581 - 22685507
Alignment:
Q  55 taggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactctta 129  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||| ||  |||||||||| |||| ||||    
T  22685581 taggaatagctaacagaagtggtaatgatgttggtgttccacctggattttctttcaatcttgttaacacactta 22685507  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 12582137 - 12582201
Alignment:
Q  53 tgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttg 117  Q
    ||||||||||||||||||||| |||| | ||||||||| ||  ||| |||||| |||||||||||    
T  12582137 tgtaggaaaagctaacaaaagcggtattcatgttggtggtcagcctagatttcgtcccaatcttg 12582201  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 12521888 - 12521952
Alignment:
Q  53 tgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttg 117  Q
    ||||||||||||||||||||| |||| | ||||||||| ||  ||| |||||| || ||||||||    
T  12521888 tgtaggaaaagctaacaaaagcggtattcatgttggtggtcagcctagatttcgtctcaatcttg 12521952  T

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Target: scaffold0038 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 81 - 120
Target Start/End: Complemental strand, 19601 - 19562
Alignment:
Q  81 gatgttggtgttccacctggatttcctcccaatcttgttg 120  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  19601 gatgttggtgttctacctggatttcctcccattcttgttg 19562  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 81 - 120
Target Start/End: Complemental strand, 28219103 - 28219064
Alignment:
Q  81 gatgttggtgttccacctggatttcctcccaatcttgttg 120  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  28219103 gatgttggtgttctacctggatttcctcccattcttgttg 28219064  T

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