View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10462_low_6 (Length: 314)
Name: NF10462_low_6
Description: NF10462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10462_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 5087876 - 5088149
Alignment:
| Q |
19 |
atatagatatgtatgatctggtactatccctggattaaagtgattctcnnnnnnnnnnnnnnnnatagaaggatcaaaaggattcccattccccacaaaa |
118 |
Q |
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| T |
5087876 |
atatagatatgtatgatctggtactatccctggattaaagtgattctcttttttttt-------atagaaggatcaaaaggattcccattccccacaaaa |
5087968 |
T |
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| Q |
119 |
gtacatgtatggccatttataaaaagattgcctctgaaattagtatctatactattggagtctttgttatgcatccatttagtagaaaagaatagagcta |
218 |
Q |
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| T |
5087969 |
gtacatgtatggccatttataaaaagattgcctctgaatttagtatctatactattggagtctttgttatgcatccatttagtagaaaagaatagagcta |
5088068 |
T |
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| Q |
219 |
tggaagggaagttgttccgataccagaaagaaattgtcggttgtttgctttgatgttcaaaccacttcgggatcgtctctg |
299 |
Q |
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| T |
5088069 |
tggaagggaagttgttccgataccagaaagaaattgtcggttgtttgctttgatgttcaaaccacttcgggatcgtctctg |
5088149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 203 - 297
Target Start/End: Complemental strand, 5097391 - 5097297
Alignment:
| Q |
203 |
gaaaagaatagagctatggaagggaagttgttccgataccagaaagaaattgtcggttgtttgctttgatgttcaaaccacttcgggatcgtctc |
297 |
Q |
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| T |
5097391 |
gaaaagaatagagctatggaagggaagtcgttccgataccagaaagaaattgtcggttgtttgctttgatgttcaaaccactttgggatcatctc |
5097297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 26642080 - 26642012
Alignment:
| Q |
131 |
ccatttataaaaagattgcctctgaaattagtatctatactattggagtctttgttatgcatccattta |
199 |
Q |
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| T |
26642080 |
ccatttataaaaagattgcctacgaatttaaaatctatactattggagtccttgttatgcatccattta |
26642012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 26748046 - 26747978
Alignment:
| Q |
131 |
ccatttataaaaagattgcctctgaaattagtatctatactattggagtctttgttatgcatccattta |
199 |
Q |
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| T |
26748046 |
ccatttataaaaagattgcctacgaatttaaaatctatactattggagtccttgttatgcatccattta |
26747978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 121 - 199
Target Start/End: Complemental strand, 26829259 - 26829181
Alignment:
| Q |
121 |
acatgtatggccatttataaaaagattgcctctgaaattagtatctatactattggagtctttgttatgcatccattta |
199 |
Q |
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| T |
26829259 |
acatgcatggccatttataaaaatattgcatctgaatttaaagtctatactatttgagtccttgttatgaatccattta |
26829181 |
T |
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