View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10463_low_1 (Length: 629)
Name: NF10463_low_1
Description: NF10463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10463_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 279 - 610
Target Start/End: Complemental strand, 19031368 - 19031036
Alignment:
| Q |
279 |
tgagtataacaaagaaagttgtcagaaaagttggatgtttaaatatcaattataaaaag----tatttattattggatatctttctttattttaaagaaa |
374 |
Q |
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| T |
19031368 |
tgagtataacaaagaaaattgtcagaaaagttggatgtttaaatatcaattataaaatgcgggtatttattattggatatttttcttta----aaataaa |
19031273 |
T |
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| Q |
375 |
gaaaggtaccctcactagtagactagtcctaattttctttaatctgggtatcatgttaggaaactaaagcatgcnnnnnnna-attatcaaattgaggta |
473 |
Q |
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| T |
19031272 |
gaaagataccctcactagtaaactagtcctaattttctttaatctggggatcatgttaggaaactaaagcatgctttttttttattatcaaattgaggta |
19031173 |
T |
|
| Q |
474 |
caaagagttttataccaagattgagtcacgtgcaaataaaaagattgtcatcaaaacatatttgccattattttagataaagatcatgcatatgcaatga |
573 |
Q |
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| T |
19031172 |
caaagagttttatatcaagattgagtcacgtgcaaataaaaagattgtcatcaaaacatatttgccattattttagataaagatcatgcatatgcaatga |
19031073 |
T |
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| Q |
574 |
tacttgttaaaggggtaggctttggttagcatgcaat |
610 |
Q |
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| T |
19031072 |
tacttgttaaaggggtaggctttggttagcatgcaat |
19031036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 19031651 - 19031434
Alignment:
| Q |
1 |
taagggtgaatgtgaaggtgaagcaacattggatacccaataatgaatgctagcggcatctcacctaaccccattgagtcggcactaactctcttctaaa |
100 |
Q |
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| T |
19031651 |
taagggtgcatgtgaaggtgaagcaacattggatacccaataatgaatgctagcggcatctcacctaa-cccattgagtcggcactaactctcttctaaa |
19031553 |
T |
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| Q |
101 |
cacaaatgttaacacgtgtattgagaagat--tctccnnnnnnnnnnnnngtgtattgagaagatgaatgttattggaacaactatttcattcataattt |
198 |
Q |
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| T |
19031552 |
cacaaatgttaacatgtgtattgagaagattctctccaaacaaaaaaaaagtgtattgagaagataaatgttattggaacagctatatcatcgataattt |
19031453 |
T |
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| Q |
199 |
ataagataattctaattta |
217 |
Q |
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| T |
19031452 |
ataagacaatcctaattta |
19031434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 457 - 585
Target Start/End: Complemental strand, 41643656 - 41643526
Alignment:
| Q |
457 |
attatcaaattgaggtacaaagagtt---ttataccaagattgagtcacgtgcaaataaaaagattgtcatcaaaacatatttgccattattttagataa |
553 |
Q |
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| T |
41643656 |
attatcaaattgaggtacaaagagttatattataccaagattgagtcacgtgcaa-taaaaagattgtcatcaaaacacatttgcgattattttagataa |
41643558 |
T |
|
| Q |
554 |
agatcatgcatatgcaatgatacttgttaaag |
585 |
Q |
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| T |
41643557 |
agatcatacgtatgcaatgacacttgtcaaag |
41643526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 483 - 585
Target Start/End: Original strand, 31168999 - 31169100
Alignment:
| Q |
483 |
ttataccaagattgagtcacgtgcaaataaaaagattgtcatcaaaacatatttgccattattttagataaagatcatgcatatgcaatgatacttgtta |
582 |
Q |
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|||||||||||||||||||| ||||| |||| |||||||||||||||| |||||||||||||||||||||||||||| | |||||||||| |||||| | |
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| T |
31168999 |
ttataccaagattgagtcacatgcaac-aaaatgattgtcatcaaaacacatttgccattattttagataaagatcatacgtatgcaatgacacttgtca |
31169097 |
T |
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| Q |
583 |
aag |
585 |
Q |
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||| |
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| T |
31169098 |
aag |
31169100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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