View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10463_low_12 (Length: 227)

Name: NF10463_low_12
Description: NF10463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10463_low_12
NF10463_low_12
[»] chr7 (1 HSPs)
chr7 (1-223)||(31055059-31055284)
[»] chr4 (2 HSPs)
chr4 (1-47)||(52430723-52430769)
chr4 (4-44)||(48620506-48620546)
[»] chr8 (5 HSPs)
chr8 (4-44)||(1839635-1839675)
chr8 (4-46)||(29584400-29584442)
chr8 (11-44)||(1111305-1111338)
chr8 (10-43)||(26772819-26772852)
chr8 (10-46)||(13406296-13406332)
[»] chr6 (2 HSPs)
chr6 (2-41)||(25073420-25073459)
chr6 (4-44)||(25361369-25361409)
[»] chr3 (2 HSPs)
chr3 (4-45)||(517801-517842)
chr3 (4-45)||(33944454-33944495)
[»] chr1 (2 HSPs)
chr1 (4-41)||(36887095-36887132)
chr1 (4-48)||(7186846-7186890)
[»] scaffold0053 (1 HSPs)
scaffold0053 (12-44)||(29124-29156)
[»] chr5 (2 HSPs)
chr5 (4-44)||(6620465-6620505)
chr5 (4-44)||(39649439-39649479)


Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 31055284 - 31055059
Alignment:
Q  1 acatttccttccctttccctccaaactagcaaacaaagcctaagttgacaactctcatggtcataatactttcatttagctttccaaaatgcaaagaata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31055284 acatttccttccctttccctccaaactagcaaacaaagcctaagttgacaactctcatggacataatactttcatttagctttccaaaatgcaaagaata 31055185  T
Q  101 aattagccttgagctttcttttattatcccgtatgtta---ttatatatttcagaggggaacgaagcataaagctctaagctaagctaaacatgactttc 197  Q
    ||||||| ||||||||||||||||| ||||||||||||   ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31055184 aattagcattgagctttcttttattgtcccgtatgttattattatatatttcagaggggaactaagcataaagctctaagctaagctaaacatgactttc 31055085  T
Q  198 caaaaacagagaagaatggattgctc 223  Q
    ||||||||||||||||||||||||||    
T  31055084 caaaaacagagaagaatggattgctc 31055059  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 52430723 - 52430769
Alignment:
Q  1 acatttccttccctttccctccaaactagcaaacaaagcctaagttg 47  Q
    ||||||| ||||||| ||||||||||| |||||||||||||||||||    
T  52430723 acatttcattcccttcccctccaaactcgcaaacaaagcctaagttg 52430769  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 48620506 - 48620546
Alignment:
Q  4 tttccttccctttccctccaaactagcaaacaaagcctaag 44  Q
    |||||||||| | ||||||||||| ||||||||||||||||    
T  48620506 tttccttcccctcccctccaaactcgcaaacaaagcctaag 48620546  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 1839675 - 1839635
Alignment:
Q  4 tttccttccctttccctccaaactagcaaacaaagcctaag 44  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  1839675 tttccttcccttcccctccaaactcgcaaacaaagcctaag 1839635  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 29584400 - 29584442
Alignment:
Q  4 tttccttccctttccctccaaactagcaaacaaagcctaagtt 46  Q
    |||||||||| ||||||||||||| ||||||||||||| ||||    
T  29584400 tttccttccccttccctccaaactcgcaaacaaagccttagtt 29584442  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 1111305 - 1111338
Alignment:
Q  11 ccctttccctccaaactagcaaacaaagcctaag 44  Q
    ||||||||||||||||| ||||||||||||||||    
T  1111305 ccctttccctccaaactcgcaaacaaagcctaag 1111338  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 26772819 - 26772852
Alignment:
Q  10 tccctttccctccaaactagcaaacaaagcctaa 43  Q
    |||||||||||||||||| |||||||||||||||    
T  26772819 tccctttccctccaaactcgcaaacaaagcctaa 26772852  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 13406332 - 13406296
Alignment:
Q  10 tccctttccctccaaactagcaaacaaagcctaagtt 46  Q
    |||||||||||||||||  ||||||||||||||||||    
T  13406332 tccctttccctccaaacacgcaaacaaagcctaagtt 13406296  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 25073420 - 25073459
Alignment:
Q  2 catttccttccctttccctccaaactagcaaacaaagcct 41  Q
    |||||||||||||| ||||||||||| |||||||||||||    
T  25073420 catttccttcccttcccctccaaacttgcaaacaaagcct 25073459  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 25361369 - 25361409
Alignment:
Q  4 tttccttccctttccctccaaactagcaaacaaagcctaag 44  Q
    ||||||| |||||||||| ||||| ||||||||||||||||    
T  25361369 tttcctttcctttccctcaaaactcgcaaacaaagcctaag 25361409  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 517801 - 517842
Alignment:
Q  4 tttccttccctttccctccaaactagcaaacaaagcctaagt 45  Q
    ||||| |||||| ||||||||||| |||||||||||||||||    
T  517801 tttccctcccttcccctccaaactcgcaaacaaagcctaagt 517842  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 33944495 - 33944454
Alignment:
Q  4 tttccttccctttccctccaaactagcaaacaaagcctaagt 45  Q
    ||||||| ||||||||||||||||  ||||||||||||||||    
T  33944495 tttcctttcctttccctccaaactcccaaacaaagcctaagt 33944454  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 36887095 - 36887132
Alignment:
Q  4 tttccttccctttccctccaaactagcaaacaaagcct 41  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  36887095 tttccttccccttccctccaaactcgcaaacaaagcct 36887132  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 7186846 - 7186890
Alignment:
Q  4 tttccttccctttccctccaaactagcaaacaaagcctaagttga 48  Q
    |||||||||| ||||||| ||||| ||||||||||||| ||||||    
T  7186846 tttccttccccttccctcaaaactcgcaaacaaagccttagttga 7186890  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 29156 - 29124
Alignment:
Q  12 cctttccctccaaactagcaaacaaagcctaag 44  Q
    |||||||||||||||| ||||||||||||||||    
T  29156 cctttccctccaaactcgcaaacaaagcctaag 29124  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 6620465 - 6620505
Alignment:
Q  4 tttccttccctttccctccaaactagcaaacaaagcctaag 44  Q
    |||||||||||| ||||| ||||| ||||||||||||||||    
T  6620465 tttccttcccttcccctcaaaactcgcaaacaaagcctaag 6620505  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 39649479 - 39649439
Alignment:
Q  4 tttccttccctttccctccaaactagcaaacaaagcctaag 44  Q
    ||||| |||||| ||||||||||| ||||||||||||||||    
T  39649479 tttccctcccttgccctccaaactcgcaaacaaagcctaag 39649439  T

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