View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10463_low_2 (Length: 372)
Name: NF10463_low_2
Description: NF10463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10463_low_2 |
 | |
|
| [»] scaffold0042 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 160 - 364
Target Start/End: Complemental strand, 52800484 - 52800280
Alignment:
| Q |
160 |
gaggaaaaagatgatttgatgaacggtgattcagagaagttcgattcaatccttcatgagttcgataagttacacgagcaagtgaagaaacctcgagaac |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
52800484 |
gaggaaaaagatgatttgatgaacggtgattcagagaagttcgattcaatccttcacgagttcgataagttacatgagcaagtgaagaaacctcgagaac |
52800385 |
T |
|
| Q |
260 |
aggttgctgacgctgaagcatttctagatctgacacgcactcttgttgaatccattaaatctcttgtcaacgaaggtgttactccttctcagtttgtttc |
359 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52800384 |
aggttgctgacgctgaagcacttctagatctgacacgcactcttgttggatccgttaaatctcttgtcaacgaaggtgttactccttctcagtttgtttc |
52800285 |
T |
|
| Q |
360 |
atctc |
364 |
Q |
| |
|
||||| |
|
|
| T |
52800284 |
atctc |
52800280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 52800618 - 52800548
Alignment:
| Q |
90 |
ggagcatcaggactccagtatttgcagaatcatccgctccgagttcttcaaactcaagtctcttatcaatg |
160 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52800618 |
ggagaatcaggactccagtattcgcagaatcatccgctccgagttcttcaaactcaagtctcttatcaatg |
52800548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 52800689 - 52800651
Alignment:
| Q |
1 |
cgtcgcgttaagagagaacgcctcaacgtcgccgccgcc |
39 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
52800689 |
cgtcgcgttaagagagaacgcctcaacgccgccgccgcc |
52800651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 164 - 364
Target Start/End: Complemental strand, 31984 - 31784
Alignment:
| Q |
164 |
aaaaagatgatttgatgaacggtgattcagagaagttcgattcaatccttcatgagttcgataagttacacgagcaagtgaagaaacctcgagaacaggt |
263 |
Q |
| |
|
||||||||||||| |||||| || ||| || ||||||||||||||||||||||| ||||| |||||| |||||||||||||||| || | ||| ||| | |
|
|
| T |
31984 |
aaaaagatgatttaatgaacactgcttcggacaagttcgattcaatccttcatgacttcgacaagttagacgagcaagtgaagaagccacaagagcagat |
31885 |
T |
|
| Q |
264 |
tgctgacgctgaagcatttctagatctgacacgcactcttgttgaatccattaaatctcttgtcaacgaaggtgttactccttctcagtttgtttcatct |
363 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||||| |||| ||| |||| ||| | || |||||||| |||||||||||||||||||| |||||| |
|
|
| T |
31884 |
tgttgacgctgaagcacttctagatctgacacgcactctggttggatcggttaactctatggtgaacgaaggggttactccttctcagtttgtgtcatct |
31785 |
T |
|
| Q |
364 |
c |
364 |
Q |
| |
|
| |
|
|
| T |
31784 |
c |
31784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 32140 - 32070
Alignment:
| Q |
90 |
ggagcatcaggactccagtatttgcagaatcatccgctccgagttcttcaaactcaagtctcttatcaatg |
160 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32140 |
ggagcatcaggactccaacattcgcagaatcatccgctccgagttcttcaaactcaagtctcttatcaatg |
32070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University