View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10463_low_3 (Length: 367)
Name: NF10463_low_3
Description: NF10463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10463_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 352
Target Start/End: Complemental strand, 43380266 - 43379937
Alignment:
| Q |
16 |
gcgaacattagcaagtggtatattattggactctagttcctgtccaagtaatgaatatattcaaattcaaattcaaattcaaattgtttgt----taaaa |
111 |
Q |
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| T |
43380266 |
gcgaacattagcaagtggtatattattggactctagttcctgtccaaataatgaatatattcaaattcaaattcaaattcaaattcaaattcaaataaaa |
43380167 |
T |
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| Q |
112 |
ttgattgataccttttgaaatgaatatccagcgagttgtgcttgattaacgccttctggggccaattggaattcagggagaataccattttcctgtgaat |
211 |
Q |
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| T |
43380166 |
ttgattgataccttttgaaatgaatatccagcgagttgtgcttgattaacgccttctggggccaattggaattcagggagaataccattttcctgtgaat |
43380067 |
T |
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| Q |
212 |
tgaatttaaacatgatgattataattataaatgaaaaacaacgcgattatataaaaatctaatggattgttaccatggaagaaacaataaggcctcgctc |
311 |
Q |
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| T |
43380066 |
t-----taaacatgatgattataa------atgaaaaacaacgcgattatataaaaatctaatggattgttaccatggaagaaacaataaggcctcgctc |
43379978 |
T |
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| Q |
312 |
gttgggaatgctcttgccatgcctcacaatccaatatctgt |
352 |
Q |
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| T |
43379977 |
gttgggaatgctcttgccatgcctcacaatccaatatctgt |
43379937 |
T |
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