View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10464_low_1 (Length: 701)
Name: NF10464_low_1
Description: NF10464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10464_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 217 - 686
Target Start/End: Original strand, 5475924 - 5476391
Alignment:
| Q |
217 |
atcactgatagtttcacaatacttttttagtcagtattaaacaaggaaacagaaacaaagagacaaataggttctgtagaaaaatataacaaagagacaa |
316 |
Q |
| |
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|||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
5475924 |
atcactgaaagtttcacactacttttttagtcagtattaaacaaagaaacagaaacaaagagacagatatgttctgtagaaaaatataacaaagagacaa |
5476023 |
T |
|
| Q |
317 |
ataaaccaaaaatc-tacttgccattttgttctatgtata--tccattcgtcaaaagctcataatcacaaatttgaaaccatctaatatcctctggtggg |
413 |
Q |
| |
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|||||||||||| | || |||||||| ||||||| || | ||||||| |||||||||||| | |||||| |||||| || ||||||||||||||| |
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| T |
5476024 |
ataaaccaaaaagcataactgccatttggttctatataaacatccattcatcaaaagctcattctggtaaatttaaaaccaactgatatcctctggtggg |
5476123 |
T |
|
| Q |
414 |
gtgggacgatggaaagcacaaaaatcatcattggacatattgttatttctctcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatgt |
513 |
Q |
| |
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|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5476124 |
atg-----atggcaagcacaaaaatcatcattggacatattgttatttctctcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatgt |
5476218 |
T |
|
| Q |
514 |
tagcactctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaatgatccttccaattgcctttcgtcatgggtcggggaagat |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5476219 |
tagcactctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaatgatccttccaattgcctttcgtcatgggtcggggaagat |
5476318 |
T |
|
| Q |
614 |
tgctgtaattggaagggtattgaatgtgacaaccaaactggtcatgttctaaagtttgagctcaatacctatg |
686 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
5476319 |
tgctgtaattggaagggtattgaatgtgacaaccaaactggtcatattctaaagtttgagctcaatacctatg |
5476391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 304 - 655
Target Start/End: Original strand, 5481101 - 5481447
Alignment:
| Q |
304 |
aacaaagagacaaataaaccaaaaatctacttgccattttgttctatgtatatccattcgtcaaaagctcataatcacaaatttgaaaccatctaatatc |
403 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| ||||| |
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|
| T |
5481101 |
aacaaagagacaaataaaccaaaaagctacttgccatcttgttctatgtatatccattcatcaaaagctcgtaatcaccaatttgaaaccatctgatatc |
5481200 |
T |
|
| Q |
404 |
ctctggtggggtgggacgatggaaagcacaaaaatcatcattggacatattgttatttctctcttcttcctttttgcatcaactcaatgtgaagttaaga |
503 |
Q |
| |
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|||||||||| || |||| ||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
5481201 |
ctctggtgggatg-----atggcaagcacaaaaatcatcagtgtacatattgttattcctctcttcttcctttttgcatcaactcaatgtgaagttaaaa |
5481295 |
T |
|
| Q |
504 |
gccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaatgatccttccaattgcctttcgtcatgggt |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||| |
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|
| T |
5481296 |
gccttaatgttagcactctttgcattaaggaagagagaatggcactccttaacgtcaaaaaagatctcaatgatccttacaattgcctttcttcatgggt |
5481395 |
T |
|
| Q |
604 |
cggggaagattgctgtaattggaagggtattgaatgtgacaaccaaactggt |
655 |
Q |
| |
|
||| ||||||| ||| |||| ||||| ||||||||| | ||||||||| |
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|
| T |
5481396 |
tgggaaagattgttgtcgctggattggtatagaatgtgactatcaaactggt |
5481447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 503 - 678
Target Start/End: Original strand, 5484144 - 5484319
Alignment:
| Q |
503 |
agccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaatgatccttccaattgcctttcgtcatggg |
602 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||| ||||| | |
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|
| T |
5484144 |
agccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaatagatctcaaagatccatccaattgcctttcttcatgag |
5484243 |
T |
|
| Q |
603 |
tcggggaagattgctgtaattggaagggtattgaatgtgacaaccaaactggtcatgttctaaagtttgagctcaa |
678 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5484244 |
ttggggaagattgctgtaattggaagggtattgaatgtgacaaccaaactggtcatgttctaaagtttgagctcaa |
5484319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 503 - 676
Target Start/End: Original strand, 5489329 - 5489502
Alignment:
| Q |
503 |
agccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaatgatccttccaattgcctttcgtcatggg |
602 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||| |
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| T |
5489329 |
agccttaatgttagtactctttgcattaaggaagagagagtggcactccttaaaatcaaaaaagatctcaaggatccttcaaattgcctttcttcatggg |
5489428 |
T |
|
| Q |
603 |
tcggggaagattgctgtaattggaagggtattgaatgtgacaaccaaactggtcatgttctaaagtttgagctc |
676 |
Q |
| |
|
| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
5489429 |
ttggggaagattgttgtaattggaagggtatagaatgtgacaaccaaactggtcatgttcaaaagtttgagctc |
5489502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 453 - 677
Target Start/End: Original strand, 5495061 - 5495285
Alignment:
| Q |
453 |
ttgttatttctctcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatgttagcactctttgcattaaggaagagagagtggcactcct |
552 |
Q |
| |
|
|||| ||||| |||||||| |||||||||||||| |||| || ||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5495061 |
ttgtcatttccctcttctttctttttgcatcaacccaatatgtagtgagtagcaataatgttagcactctttgcattaaggaagagagagtggcactcct |
5495160 |
T |
|
| Q |
553 |
taacatcaaaaaagatctcaatgatccttccaattgcctttcgtcatgggtcggggaagattgctgtaattggaagggtattgaatgtgacaaccaaact |
652 |
Q |
| |
|
||| ||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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|
| T |
5495161 |
taaaatcaaaaaagatctcaaagatccatccaattgtctttcttcatgggtcggggaagattgctgtaattggaagggtatacaatgtaacaaccaaact |
5495260 |
T |
|
| Q |
653 |
ggtcatgttctaaagtttgagctca |
677 |
Q |
| |
|
||||||||| ||||| || |||||| |
|
|
| T |
5495261 |
ggtcatgttttaaagcttaagctca |
5495285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 421 - 645
Target Start/End: Original strand, 5466460 - 5466684
Alignment:
| Q |
421 |
gatggaaagcacaaaaatcatcattggacatattgttatttctctcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatgttagcact |
520 |
Q |
| |
|
||||| |||||||| |||| || ||||| || ||||||| ||||| |||| ||||||||||||||||| |||| ||||| ||||||| ||||||||||| |
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|
| T |
5466460 |
gatggcaagcacaagaatcgtctttggatattatgttattgctctcctctttctttttgcatcaactcagtgtgtagttatgagccttgatgttagcact |
5466559 |
T |
|
| Q |
521 |
ctttgcattaaggaagagagagtggcactccttaacatcaaaaaagatctcaatgatccttccaattgcctttcgtcatgggtcggggaagattgctgta |
620 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||||| || ||||| ||| | ||||||||| |
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|
| T |
5466560 |
ctttgcattaaagaagagagggtggcactccttaacataaaaaaagatctgaacgatccttccaattgcctttcctcttgggttgggaaggattgctgtg |
5466659 |
T |
|
| Q |
621 |
attggaagggtattgaatgtgacaa |
645 |
Q |
| |
|
| |||| ||||| |||||||||| |
|
|
| T |
5466660 |
actggattggtatacaatgtgacaa |
5466684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 41 - 140
Target Start/End: Original strand, 5475218 - 5475315
Alignment:
| Q |
41 |
ttttttaataagaaggaacaaaaacaagcagaaaaaacaagaagtgtgtgtcaaggagaattcttaaaatagtaaacagtttatgactacatttatttta |
140 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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|
| T |
5475218 |
ttttttaataagaagcaacaaaaacaagcagaaaaaacaagaagtgt--gtcaaggagaattcttaaaatagtgaacagtttatgattacatttatttta |
5475315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 132 - 219
Target Start/End: Original strand, 5475804 - 5475891
Alignment:
| Q |
132 |
tttattttacagcattaccatgattttgagcctgctaagttcatgtatttaatttagacaatgaacttcagagaatatgcagcacatc |
219 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||| |
|
|
| T |
5475804 |
tttattttacagcattaccataattttgggcctgctaagttcatgtatttaatttagacaataaacttcagagcagatgcagcacatc |
5475891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 5483523 - 5483616
Alignment:
| Q |
102 |
tcttaaaatagtaaacagtttatgactacatttattttacagcattaccatgattttgagcctgctaagttcatgtatttaatttagacaatga |
195 |
Q |
| |
|
|||||||||| |||||| ||||||||| |||||||||||||||||| || ||| |||||| |||| || |||| ||| ||| |||| |||||| |
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|
| T |
5483523 |
tcttaaaataataaacaatttatgacttcatttattttacagcattgccgtgactttgaggctgccaatttcaaatatctaacttagtcaatga |
5483616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 5481015 - 5481060
Alignment:
| Q |
215 |
acatcactgatagtttcacaatacttttttagtcagtattaaacaa |
260 |
Q |
| |
|
|||| |||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
5481015 |
acatgactgatagtttcacaatattttttaagtcagtattaaacaa |
5481060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 5480857 - 5480950
Alignment:
| Q |
106 |
aaaatagtaaacagtttatgactacatttattttacagcattaccatgattttgagcctgctaagttcatgtatttaatttagacaatgaactt |
199 |
Q |
| |
|
|||||| ||||||||| |||||| |||||||||| | |||| || ||| ||||| ||||||| ||| ||||||||||| ||||||||||| |
|
|
| T |
5480857 |
aaaataataaacagttgatgacttgatttattttataacattgccgtgactttgaagctgctaatatcaaatatttaatttaaacaatgaactt |
5480950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 32026895 - 32026770
Alignment:
| Q |
73 |
aaaaacaagaagtgtgtgtcaaggagaattcttaaaatagtaaacagtttatgactacatttattttacagcattaccatgattttgagcctgctaagtt |
172 |
Q |
| |
|
||||||||||||| |||||||| || ||| |||||||| ||||| ||| |||||| |||||||||| | |||| | ||| |||||| ||||||| | |
|
|
| T |
32026895 |
aaaaacaagaagt--gtgtcaagaaggattgttaaaataataaacggttgatgacttgatttattttataacattgtcgtgactttgaggctgctaatat |
32026798 |
T |
|
| Q |
173 |
catgtatttaatttagacaatgaacttc |
200 |
Q |
| |
|
|| | |||| |||||||||| |||||| |
|
|
| T |
32026797 |
caaatgtttagtttagacaattaacttc |
32026770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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