View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10464_low_2 (Length: 463)
Name: NF10464_low_2
Description: NF10464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10464_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 22 - 452
Target Start/End: Original strand, 40212080 - 40212505
Alignment:
| Q |
22 |
ttgcgtgctaagagaagctttgcaaatcttaaggcttcattaattcttaatcaaagacacaataaagaaatgaaatttggatcattgagtttattcaacg |
121 |
Q |
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| T |
40212080 |
ttgcgtgctaagagaagctttgcaaatcttatggcttcattaattcctaatcaaagacacaataaagaaa-----tttggatcattgagtttattcaacg |
40212174 |
T |
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| Q |
122 |
gttaggtgtaggaatttcggtcgatttccaaattcttgtcaacaacatatgcatgtgacatagaagctaatactttggggtactactaactaacatatca |
221 |
Q |
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| T |
40212175 |
attaggtgtaggaatttcggtcgatttccaaattcttgtcaacaacatatgcatgtgacatagaagctaatactttggggtactactaactaacatatca |
40212274 |
T |
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| Q |
222 |
tgaacttcgtttctggtagtttaagcattaatattataaagtataaactatcaaataatatgtatcttataaaatattaattcacttcccttagaactca |
321 |
Q |
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| T |
40212275 |
tgaacttcgtttctggtagtttaagcattaatattataaagtataaactataaaataatatgtatcttataaaatattaattcacttcccttagaactca |
40212374 |
T |
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| Q |
322 |
aaacagaaaacatgtcaacacggttttctgttgggatttctttaacgcggttcagattttggacggcaacgtaaaatacagaaatacttattgcattttg |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40212375 |
aaacagaaaacatgtcaacacggttttctgttgggatttctttaacgcggttcagattttggacggcaacgtaaaatacagaaatacttattgcattttg |
40212474 |
T |
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| Q |
422 |
caaatcctaatactaatatatacaatttcat |
452 |
Q |
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|||||||||||||||||||||||||| |||| |
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| T |
40212475 |
caaatcctaatactaatatatacaatgtcat |
40212505 |
T |
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