View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10464_low_3 (Length: 374)
Name: NF10464_low_3
Description: NF10464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10464_low_3 |
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| [»] scaffold0187 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 15 - 367
Target Start/End: Complemental strand, 37865986 - 37865618
Alignment:
| Q |
15 |
atggcatagagagagcttaaacaccacagatataaagtataaagatgggtttaatgcagaatgtctaagctaaggctactctattttaattctcactcat |
114 |
Q |
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| T |
37865986 |
atggcatagagagagcttaaacaccacagatataaagtataaagatgggtttaatgcagaatgtctaagctaaggctactctattttaattctcactcat |
37865887 |
T |
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| Q |
115 |
ccaataatgttctttgtaaaagactatatataccaataatctttctgattttatgtatgatcgatgatccatcattca----------------ctattt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37865886 |
ccaataatgttctttgtaaaagactatatataccaataatctttctgattttatgtatgatcgatgatccatcattcactataattgtcatttactattt |
37865787 |
T |
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| Q |
199 |
cttctgttacaagtcacaaaattatacgtacagtcattaatagttaatacaatatgattgtcagtcccacatagatgagatatcttgtacatgcgtttgt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37865786 |
cttctgttacaagtcacaaaattatacgtacagtcattaatagttaatacaatatgattgtcagtcccacatagatgagatatcttgaacatgcgtttgt |
37865687 |
T |
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| Q |
299 |
aagtggcaggtagttcacactttacaagctagttttgtcggattgagttgggccaaacacaaattattg |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37865686 |
aagtggcaggtagttcacactttacaagctagttttgtcggattgagttgggccaaacacaaattattg |
37865618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 37909161 - 37909011
Alignment:
| Q |
24 |
agagagcttaaacaccacagatataaag-tataaagatgggtttaatgcagaatgtctaagctaaggctactctattttaattctcactcatccaataat |
122 |
Q |
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| T |
37909161 |
agagagcttaatcaccaccgatttaaaggtataaaggtgggactaatgcagaatgtttaagctaaggctacactattttatttctcactcatccaataat |
37909062 |
T |
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| Q |
123 |
gttctttgtaaaagactatatataccaataatctttctgattttatgtatg |
173 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
37909061 |
gttccttgtaaaagactatatataccggtaatctttctgattttacgtatg |
37909011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 37879897 - 37879747
Alignment:
| Q |
24 |
agagagcttaaacaccacagatataaag-tataaagatgggtttaatgcagaatgtctaagctaaggctactctattttaattctcactcatccaataat |
122 |
Q |
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||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||| |||||||| |||||||||||||| |||||| |||| ||| || |
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| T |
37879897 |
agagagcttaagcaccacagatataaaggtataaaggtgggtttaatgcagaatgtttaagctaatgctactctattttatttctcattcattcaagtat |
37879798 |
T |
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| Q |
123 |
gttctttgtaaaagactatatataccaataatctttctgattttatgtatg |
173 |
Q |
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|||||||||||||||||| |||||| ||||||| ||| |||||||||| |
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| T |
37879797 |
gttctttgtaaaagactacatatacttgcaatctttttgagtttatgtatg |
37879747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 37916347 - 37916240
Alignment:
| Q |
27 |
gagcttaaacaccacagatataaag-tataaagatgggtttaatgcagaatgtctaagctaaggctactctattttaattctcactcatccaataatgtt |
125 |
Q |
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||||||| |||||| ||||||||| ||||||| ||||||||||||||||||| || |||||||||||||||||||| |||||| |||| |||| ||||| |
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| T |
37916347 |
gagcttacacaccattgatataaaggtataaaggtgggtttaatgcagaatgtttaggctaaggctactctattttatttctcattcattcaattatgtt |
37916248 |
T |
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| Q |
126 |
ctttgtaa |
133 |
Q |
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|| ||||| |
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| T |
37916247 |
ctatgtaa |
37916240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 114; Significance: 1e-57; HSPs: 4)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 51 - 188
Target Start/End: Original strand, 8706 - 8843
Alignment:
| Q |
51 |
gtataaagatgggtttaatgcagaatgtctaagctaaggctactctattttaattctcactcatccaataatgttctttgtaaaagactatatataccaa |
150 |
Q |
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|||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8706 |
gtataaaggtgggtctaatgcagaatgtttaagctaaggctactctattttaattctcactcatccaataatgttctttgtaaaagactatatataccaa |
8805 |
T |
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| Q |
151 |
taatctttctgattttatgtatgatcgatgatccatca |
188 |
Q |
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| T |
8806 |
taatctttctgattttatgtattttccatgatccatca |
8843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 51 - 188
Target Start/End: Original strand, 19034 - 19171
Alignment:
| Q |
51 |
gtataaagatgggtttaatgcagaatgtctaagctaaggctactctattttaattctcactcatccaataatgttctttgtaaaagactatatataccaa |
150 |
Q |
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|||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19034 |
gtataaaggtgggtctaatgcagaatgtttaagctaaggctactctattttaattctcactcatccaataatgttctttgtaaaagactatatataccaa |
19133 |
T |
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| Q |
151 |
taatctttctgattttatgtatgatcgatgatccatca |
188 |
Q |
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|||||||||||||||||||||| || ||||||||||| |
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| T |
19134 |
taatctttctgattttatgtattttccatgatccatca |
19171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 52 - 189
Target Start/End: Original strand, 1511 - 1653
Alignment:
| Q |
52 |
tataaagatgggtttaatgcagaatgtctaagctaaggctactctattttaattctcactcatccaataatgttctttgtaaaagac-----tatatata |
146 |
Q |
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||||||| ||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1511 |
tataaaggtgggtttaatgcataatgtttaagctaaggctactctattttatttctcactcatccaataatgttctttgtaaaagactatattatatata |
1610 |
T |
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| Q |
147 |
ccaataatctttctgattttatgtatgatcgatgatccatcat |
189 |
Q |
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||| |||||||||||||||||| ||| |||||||||||||||| |
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| T |
1611 |
ccagtaatctttctgattttatatattatcgatgatccatcat |
1653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 29916 - 30066
Alignment:
| Q |
24 |
agagagcttaaacaccacagatataaag-tataaagatgggtttaatgcagaatgtctaagctaaggctactctattttaattctcactcatccaataat |
122 |
Q |
| |
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||||||||||| |||||| ||| ||||| ||||||| |||| ||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
29916 |
agagagcttaatcaccaccgatttaaaggtataaaggtgggactaatgcagaatgtttaagctaaggctacactattttatttctcactcatccaataat |
30015 |
T |
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| Q |
123 |
gttctttgtaaaagactatatataccaataatctttctgattttatgtatg |
173 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
30016 |
gttccttgtaaaagactatatataccggtaatctttctgattttacgtatg |
30066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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