View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10464_low_4 (Length: 336)
Name: NF10464_low_4
Description: NF10464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10464_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 27145136 - 27145461
Alignment:
| Q |
1 |
ttctctggctcgtcccacgcgcttttgtcgcgtccaattgcccacgcgtttatccaaacacgtgttgattttgggataaagtaacctgatacggtagtat |
100 |
Q |
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| T |
27145136 |
ttctctggctcgtcccacgcgcttttgtcgcgtccaattgcccacacgtttatccaaacacgtgttgattttgggataaagtaacctgatacggtagtat |
27145235 |
T |
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| Q |
101 |
cttctgctgtctcatggagaagtaagggaattggagggtggagtcgcaatgtttctttgataatgcatttgagataagtcaatttttctagatcggtttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27145236 |
cttctgctgtctcatggagaagtaagggaattggagggtggagtcgcaatgtttctttgataatgcatttgagataagtcaatttttctagatcggtttc |
27145335 |
T |
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| Q |
201 |
gttgaactttcgacctaaaccaataacatcggtgagctcttgttgaatcttttgaagatctttggggcttttcattagctctgccattgtccattctatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27145336 |
gttgaactttcgacctaaaccaataacatcggtgagctcttgttgaatcttttgaagatctttggggcttttcattagctctgccattgtccattctatc |
27145435 |
T |
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| Q |
301 |
actgatgctactgtctctgctcctcc |
326 |
Q |
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||||||||||||||||| | |||||| |
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| T |
27145436 |
actgatgctactgtctcagttcctcc |
27145461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 21181724 - 21181603
Alignment:
| Q |
1 |
ttctctggctcgtcccacgcgcttttgtcgcgtccaattgcccacgcgtttatccaaacacgtgttgattttgggataaagtaacctgatacggtagtat |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21181724 |
ttctctggctcgtcccaagcgcttttgtcgcgtccaattgcccacgcgtttatccaaacacgtgttgattttgggataaagtaacctgatacggtagtat |
21181625 |
T |
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| Q |
101 |
cttctgctgtctcatggagaag |
122 |
Q |
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| T |
21181624 |
cttctgctgtctcatggagaag |
21181603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 21180644 - 21180597
Alignment:
| Q |
115 |
tggagaagtaagggaattggagggtggagtcgcaatgtttctttgata |
162 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21180644 |
tggagaagtaagggaattggagggtggagtcgcaatgtttctttgata |
21180597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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