View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10464_low_6 (Length: 240)
Name: NF10464_low_6
Description: NF10464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10464_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 42779575 - 42779693
Alignment:
| Q |
14 |
agatacaaatccaacaaaacgcacacggcagtcccaaaaaatacagactaaatgaaagcaatgacaacaactaaatcaaaatcaacgtaactagatgcta |
113 |
Q |
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| T |
42779575 |
agatacaaatccaacaaaacgcacacggcagtcccaaaaaatacagactaaatgaaagcaatgacaacaactaaatcaaaatcaacgtaactagatgcta |
42779674 |
T |
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| Q |
114 |
ggaacaagtacttcgtagc |
132 |
Q |
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| T |
42779675 |
ggaacaagtacttcgtagc |
42779693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 42779751 - 42779801
Alignment:
| Q |
190 |
tgtaccaccaccaaaaatggcaccaatagagacgcaaaaacgcagcagcac |
240 |
Q |
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| T |
42779751 |
tgtaccaccaccaaaaatggcaccaatagagacgcaaaaacgcagcagcac |
42779801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 29555017 - 29554977
Alignment:
| Q |
89 |
tcaaaatcaacgtaactagatgctaggaacaagtacttcgt |
129 |
Q |
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| T |
29555017 |
tcaaaatcaacataactagatgccaggaacaagtacttcgt |
29554977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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