View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10465_high_1 (Length: 557)

Name: NF10465_high_1
Description: NF10465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10465_high_1
NF10465_high_1
[»] chr2 (1 HSPs)
chr2 (16-544)||(1720608-1721136)
[»] chr3 (1 HSPs)
chr3 (298-516)||(18372697-18372915)


Alignment Details
Target: chr2 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 16 - 544
Target Start/End: Complemental strand, 1721136 - 1720608
Alignment:
Q  16 cattcttcttgttagatgcatatatacttggcctgatcaaataatgagtgataaattaaaagccaaaagaaacaaaaacagtgttaccagaaataacact 115  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1721136 cattcttcttgttagatgcatatatacttgccctgatcaaataatgagtgataaattaaaagccaaaagaaacaaaaacagtgttaccagaaataacact 1721037  T
Q  116 aacggtacttgcttaaattatcataagttacttagctcaacttcaatgcatactggtggnnnnnnncttgcttgcagtgattgcaaacgagagtttttag 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  1721036 aacggtacttgcttaaattatcataagttacttagctcaacttcaatgcatactggtggaaaaaaacttgcttgcagtgattgcaaacgagagtttttag 1720937  T
Q  216 tgttcacagaaacaactatgtaccgttgcaacaaatgcgaaggtgttagtaaatcaatttcaggttataaacaattcagagaaaatagtttaagagccaa 315  Q
    |||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1720936 tgtctacaaaaacaactatgtaccgttgcaacaaatgcgaaggtgttagtaaatcaatttcaggttataaacaattcagagaaaatagtttaagagccaa 1720837  T
Q  316 attcttcaaccaagatcgacaacaaaatgctagtaaaaatgcatcaagccattcctctttgttgttgtctacaactacaatcggtaacaaacgcgcggtt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1720836 attcttcaaccaagatcgacaacaaaatgctagtaaaaatgcatcaagccattcctctttgttgttgtctacaactacaatcggtaacaaacgcgcggtt 1720737  T
Q  416 ctatgtggagttacttacagaagaagacggtacatgctcaagggaaccgttaatgatgttgttaacatgaaaaaactactgactaataattttgcattcc 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1720736 ctatgtggagttacttacagaagaagacggtacatgctcaagggaaccgttaatgatgttgttaacatgaaaaaactactgactaataattttgcattcc 1720637  T
Q  516 caatagaatccatacgcgtcctcacaggt 544  Q
    |||||||||||||||||||||||||||||    
T  1720636 caatagaatccatacgcgtcctcacaggt 1720608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 516
Target Start/End: Original strand, 18372697 - 18372915
Alignment:
Q  298 aaatagtttaagagccaaattcttcaaccaagatcgacaacaaaatgcta--gtaaaaatgcatcaagccattcctctttgttgttgtctacaactacaa 395  Q
    ||||||||||  |||  |||| ||||||||||||| || ||| | |||||  | | |||||||||| |||||||||| | ||||||||||||||| |  |    
T  18372697 aaatagtttagaagctgaattgttcaaccaagatcaactacacagtgctatagcacaaatgcatcaggccattcctcgtcgttgttgtctacaacaatca 18372796  T
Q  396 tcggtaacaaacgcgcggttctatgtggagttacttacagaagaagacggtacatgctcaagggaaccgttaatgatgttgttaacatgaaaaaactact 495  Q
     | ||||||| | |  ||||||||||||||| |||| |||  ||||| | |||| |||||| |||||| |||||||||| ||||||||| |||| |||      
T  18372797 cccgtaacaagcacatggttctatgtggagtaacttgcag-cgaagatgttacaagctcaa-ggaaccattaatgatgtcgttaacatggaaaatctaac 18372894  T
Q  496 gactaataattttgcattccc 516  Q
    |  ||| ||||||||||||||    
T  18372895 ggttaacaattttgcattccc 18372915  T

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