View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10465_high_11 (Length: 250)
Name: NF10465_high_11
Description: NF10465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10465_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 28073423 - 28073186
Alignment:
| Q |
1 |
aaatagaattttatttattgcattataggtgagattttaaagttcacataaaaattgaaccagataaataaaatctacctaaagaggatatcatgaaata |
100 |
Q |
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| T |
28073423 |
aaatagaattttatttattgcattataggtgagattttaaagttcacataaaaattgaaccagataaataaaatctacctaaagaggatatcatgaaata |
28073324 |
T |
|
| Q |
101 |
cttttaaatgcttgaatgcatactttattaacaaatttgtagagatggcgtcttatgtctgtctggagatcttctggcaaattcttgagaaccatactct |
200 |
Q |
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| T |
28073323 |
cttttaaatgcttgaatgcatactttattaacaaatttgtagagatggcgtcttatgtctgtctggagatcttctggcaaattcttgagaaccatactct |
28073224 |
T |
|
| Q |
201 |
caggaacacccattgttgcatgccaactataccattca |
238 |
Q |
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| T |
28073223 |
caggaacacccattgttgcatgccaactataccattca |
28073186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 6 - 238
Target Start/End: Complemental strand, 28090349 - 28090125
Alignment:
| Q |
6 |
gaattttatttattgcattataggtgagattttaaagttcacataaaaattgaaccagataaataaaatctacctaaagaggatatcatgaaatactttt |
105 |
Q |
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|||||||||||| ||||| |||||||||||||||||| ||||||| | ||||||| |||||||||||| || ||||||| |||||||||| | |||| |
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| T |
28090349 |
gaattttatttaaagcattttaggtgagattttaaagtccacataacatctgaaccatataaataaaatcgacttaaagagtatatcatgaactcttttt |
28090250 |
T |
|
| Q |
106 |
aaatgcttgaatgcatactttattaacaaatttgtagagatggcgtcttatgtctgtctggagatcttctggcaaattcttgagaaccatactctcagga |
205 |
Q |
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| T |
28090249 |
aaatgc--------atactttattaacaaatttgaagagatggcgtcttatgtctgtctggagatcttctggcaaattttccagaaccattttctcagga |
28090158 |
T |
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| Q |
206 |
acacccattgttgcatgccaactataccattca |
238 |
Q |
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| T |
28090157 |
acaccccttgttgcagcccaactataccgttca |
28090125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 90 - 232
Target Start/End: Complemental strand, 28033957 - 28033815
Alignment:
| Q |
90 |
atcatgaaatacttttaaatgcttgaatgcatactttattaacaaatttgtagagatggcgtcttatgtctgtctggagatcttctggcaaattcttgag |
189 |
Q |
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|||||||| | |||| ||||| | ||||||||| || |||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||| || |
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| T |
28033957 |
atcatgaacttctttaaaatgttccaatgcatacatttttaacaaatttgaagagatgacgtcgtatgtctgtctggagatcttctggcaaattctccag |
28033858 |
T |
|
| Q |
190 |
aaccatactctcaggaacacccattgttgcatgccaactatac |
232 |
Q |
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| T |
28033857 |
aaccattttctcagaaacacctcttgttgcagcccaactatac |
28033815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 28000339 - 28000216
Alignment:
| Q |
115 |
aatgcatactttattaacaaatttgtagagatggcgtcttatgtctgtctggagatcttctggcaaattcttgagaaccatactctcaggaacacccatt |
214 |
Q |
| |
|
|||||||||||| ||||| |||||| ||| ||| |||| ||||||| | |||||||||||||||||||||| | || ||| |||||| ||||||| || |
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| T |
28000339 |
aatgcatacttttttaacgaatttgaagatatgacgtcgtatgtctatttggagatcttctggcaaattctccaaaatcattttctcagaaacacccctt |
28000240 |
T |
|
| Q |
215 |
gttgcatgccaactataccattca |
238 |
Q |
| |
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|||||| ||||||||||| |||| |
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| T |
28000239 |
gttgcagcccaactataccgttca |
28000216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 208
Target Start/End: Complemental strand, 27915720 - 27915603
Alignment:
| Q |
91 |
tcatgaaatacttttaaatgcttgaatgcatactttattaacaaatttgtagagatggcgtcttatgtctgtctggagatcttctggcaaattcttgaga |
190 |
Q |
| |
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||||||||| |||||||||| | |||||||||||| ||||||||| || ||| ||| |||| || ||| ||||||||| || ||||||||||| |||| |
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| T |
27915720 |
tcatgaaattcttttaaatgttcaaatgcatacttttttaacaaatctgaagatatgacgtcgtagatctatctggagattttttggcaaattctcgaga |
27915621 |
T |
|
| Q |
191 |
accatactctcaggaaca |
208 |
Q |
| |
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||| | |||||||||||| |
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| T |
27915620 |
accgttctctcaggaaca |
27915603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 193
Target Start/End: Complemental strand, 28016267 - 28016189
Alignment:
| Q |
115 |
aatgcatactttattaacaaatttgtagagatggcgtcttatgtctgtctggagatcttctggcaaattcttgagaacc |
193 |
Q |
| |
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|||||||||||| |||||||| ||| ||| || |||| ||||||| ||||||| | |||||||||||||| ||||||| |
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| T |
28016267 |
aatgcatacttttttaacaaaattgaagatataacgtcgtatgtctatctggaggttttctggcaaattctcgagaacc |
28016189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 1439037 - 1438820
Alignment:
| Q |
21 |
cattataggtgagattttaaagttcacataaaaattgaaccagataaataaaatctacctaaagaggatatcatgaaatacttttaaatgcttgaatgca |
120 |
Q |
| |
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||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| ||||||| ||||||| | || ||||||||||||||||||| |
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| T |
1439037 |
cattataggtgagattttaaagttcacataacatctgaactagataaataaaatctacttaaagagtatatcatttactatttttaaatgcttgaatgca |
1438938 |
T |
|
| Q |
121 |
tactttattaacaaatttgtagagatggcgtcttatgtctgtctggagatcttctggcaaattcttgagaaccatactctcaggaacacccattgttgca |
220 |
Q |
| |
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|||||| || ||||||||| ||||||||||||| |||||| |||||||||||||||||||||| | ||| |||| ||||||||| ||| |||||||| |
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| T |
1438937 |
tactttttttacaaatttgaagagatggcgtctaatgtctttctggagatcttctggcaaattttctagagccatttcctcaggaacgccccttgttgca |
1438838 |
T |
|
| Q |
221 |
tgccaactataccattca |
238 |
Q |
| |
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|||| |||||| |||| |
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| T |
1438837 |
gcccaagtataccgttca |
1438820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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