View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10465_high_3 (Length: 429)
Name: NF10465_high_3
Description: NF10465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10465_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 44085133 - 44085534
Alignment:
| Q |
18 |
ccttagacttgttcaatcttatcaaattggctgaaattacccttctgtttgaagatctgagtatggtgatgtctacaataaaggcgatgttcatgtgcca |
117 |
Q |
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| T |
44085133 |
ccttagacttgttcaatcttatcaaattggctgaaattacccttctgtttgaagatctgagtatggtgatgtctacaataaaggcgatgttcatgtgcca |
44085232 |
T |
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| Q |
118 |
catagtttgatggactgattatacaacctccatgtgtgcacttgaagcaagtcttatggtaagattctccatcaacagctacctg-aaaaaagaacaacc |
216 |
Q |
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| T |
44085233 |
catagtttgatggactgattatacaacctccatgtgtgcacctgaagcaattcttatggtaagattctccatcaacagctacctgaaaaaaagaacaacc |
44085332 |
T |
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| Q |
217 |
ccaatgaatatatatggtaagatctaggatata----taattttaatgttcctatcatatctcagaaggatttcaannnnnnnatttactcccttggtta |
312 |
Q |
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| T |
44085333 |
ccaatga--atatatggttagatcttggatatatatttaattgttatgttcctatcatatctcagaaggatttcaatttttttatttactcccttggtta |
44085430 |
T |
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| Q |
313 |
attaaatactaacttcaaatatttgctggtgcctaatggcaaatctagcttaatcactgtttccagctcattttatgtatatttcaatttatagttctgt |
412 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44085431 |
attaaatactaacttcaaaaatttgctggtgcctaatggcaaatctagcttaatcactgtttccagctcattttatgtatatttcaatttatagttctgt |
44085530 |
T |
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| Q |
413 |
ttct |
416 |
Q |
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| T |
44085531 |
ttct |
44085534 |
T |
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