View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10465_high_5 (Length: 329)
Name: NF10465_high_5
Description: NF10465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10465_high_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 28 - 314
Target Start/End: Complemental strand, 13700342 - 13700056
Alignment:
| Q |
28 |
tctattatcatcatgtacatatgcatctgctattcaacctaagactctaaactattagacaataaacttcaaatcactccaactttcctcagatgtcgta |
127 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13700342 |
tctattatcataatgtacatatgcatctgctattcaacctaagactctaaactaatagacaataaacttcaaatcactccaactttcctcagatgtcgta |
13700243 |
T |
|
| Q |
128 |
tctttcacagatagatagagacttttattcaatatatgaatggcccacaaactagcttcataccagaatctctttggtacatctctaccagagaacatgc |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13700242 |
tctttcacagatagatagagacttttattcaatatatgaatggcccacagactagcttcatactagaatctctttggtacatctctaccagagaacatgc |
13700143 |
T |
|
| Q |
228 |
ttctcaccatgttcatcattgttttcttctttaattttgagattccattcaaacatggagattaagttgtcttttaaaccatgcaag |
314 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13700142 |
ttctcactatgttcatcattgttttcttctttaattttgagattccattcaaacatggagattaagttttcttttaaaccatgcaag |
13700056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 13706305 - 13706171
Alignment:
| Q |
1 |
tttgacaccttttgcatcaagcttctttctattatcatcatgtacatatgcatctgctattcaacctaagactctaaactattagacaataaacttcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||| || ||||||||| |||||||| |
|
|
| T |
13706305 |
tttgacaccttttgcatcaagcttctttctattatcatgaggtacatatgcatctgctattcaaccaaagactctaaattaatagacaatagacttcaaa |
13706206 |
T |
|
| Q |
101 |
tcactccaactttcctcagatgtcgtatctttcac |
135 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||| |
|
|
| T |
13706205 |
tcactccaagtttcctcagatgtcgtatgtttcac |
13706171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 13713796 - 13713662
Alignment:
| Q |
1 |
tttgacaccttttgcatcaagcttctttctattatcatcatgtacatatgcatctgctattcaacctaagactctaaactattagacaataaacttcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||| || ||||||||| |||||||| |
|
|
| T |
13713796 |
tttgacaccttttgcatcaagcttctttctattatcatgaggtacatatgcatctgctattcaaccaaagactctaaattaatagacaatagacttcaaa |
13713697 |
T |
|
| Q |
101 |
tcactccaactttcctcagatgtcgtatctttcac |
135 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||| |
|
|
| T |
13713696 |
tcactccaagtttcctcagatgtcgtatgtttcac |
13713662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 68 - 315
Target Start/End: Complemental strand, 17390290 - 17390045
Alignment:
| Q |
68 |
aagactctaaactattagacaataaacttcaaatcactccaactttcctcagatgtcgtatctttcacagatagatagagacttttattcaatatatgaa |
167 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||| | | ||||| || || ||||||||||| ||||| |
|
|
| T |
17390290 |
aagactctaaactaatagacaatagacttcaaatcactccaagtttcctcagatgtcgtatctttgaaaaataga--gaaacatttattcaatacatgaa |
17390193 |
T |
|
| Q |
168 |
tggcccacaaactagcttcataccagaatctctttggtacatctctaccagagaacatgcttctcaccatgttcatcattgttttcttctttaattttga |
267 |
Q |
| |
|
| | ||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
17390192 |
taggccacaaacttgcttcataccagaaactctttggtacatctctactagagaacatgcttctcaccatgttcttcattgttttcttctttcattttga |
17390093 |
T |
|
| Q |
268 |
gattccattcaaacatggagattaagttgtcttttaaaccatgcaagt |
315 |
Q |
| |
|
|||||||||| | |||| || |||||| |||||||||||||||||||| |
|
|
| T |
17390092 |
gattccattctaccatgaagtttaagtggtcttttaaaccatgcaagt |
17390045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University