View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10465_low_1 (Length: 557)
Name: NF10465_low_1
Description: NF10465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10465_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 16 - 544
Target Start/End: Complemental strand, 1721136 - 1720608
Alignment:
| Q |
16 |
cattcttcttgttagatgcatatatacttggcctgatcaaataatgagtgataaattaaaagccaaaagaaacaaaaacagtgttaccagaaataacact |
115 |
Q |
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| T |
1721136 |
cattcttcttgttagatgcatatatacttgccctgatcaaataatgagtgataaattaaaagccaaaagaaacaaaaacagtgttaccagaaataacact |
1721037 |
T |
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| Q |
116 |
aacggtacttgcttaaattatcataagttacttagctcaacttcaatgcatactggtggnnnnnnncttgcttgcagtgattgcaaacgagagtttttag |
215 |
Q |
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| T |
1721036 |
aacggtacttgcttaaattatcataagttacttagctcaacttcaatgcatactggtggaaaaaaacttgcttgcagtgattgcaaacgagagtttttag |
1720937 |
T |
|
| Q |
216 |
tgttcacagaaacaactatgtaccgttgcaacaaatgcgaaggtgttagtaaatcaatttcaggttataaacaattcagagaaaatagtttaagagccaa |
315 |
Q |
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| T |
1720936 |
tgtctacaaaaacaactatgtaccgttgcaacaaatgcgaaggtgttagtaaatcaatttcaggttataaacaattcagagaaaatagtttaagagccaa |
1720837 |
T |
|
| Q |
316 |
attcttcaaccaagatcgacaacaaaatgctagtaaaaatgcatcaagccattcctctttgttgttgtctacaactacaatcggtaacaaacgcgcggtt |
415 |
Q |
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| T |
1720836 |
attcttcaaccaagatcgacaacaaaatgctagtaaaaatgcatcaagccattcctctttgttgttgtctacaactacaatcggtaacaaacgcgcggtt |
1720737 |
T |
|
| Q |
416 |
ctatgtggagttacttacagaagaagacggtacatgctcaagggaaccgttaatgatgttgttaacatgaaaaaactactgactaataattttgcattcc |
515 |
Q |
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| T |
1720736 |
ctatgtggagttacttacagaagaagacggtacatgctcaagggaaccgttaatgatgttgttaacatgaaaaaactactgactaataattttgcattcc |
1720637 |
T |
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| Q |
516 |
caatagaatccatacgcgtcctcacaggt |
544 |
Q |
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| T |
1720636 |
caatagaatccatacgcgtcctcacaggt |
1720608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 516
Target Start/End: Original strand, 18372697 - 18372915
Alignment:
| Q |
298 |
aaatagtttaagagccaaattcttcaaccaagatcgacaacaaaatgcta--gtaaaaatgcatcaagccattcctctttgttgttgtctacaactacaa |
395 |
Q |
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|||||||||| ||| |||| ||||||||||||| || ||| | ||||| | | |||||||||| |||||||||| | ||||||||||||||| | | |
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| T |
18372697 |
aaatagtttagaagctgaattgttcaaccaagatcaactacacagtgctatagcacaaatgcatcaggccattcctcgtcgttgttgtctacaacaatca |
18372796 |
T |
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| Q |
396 |
tcggtaacaaacgcgcggttctatgtggagttacttacagaagaagacggtacatgctcaagggaaccgttaatgatgttgttaacatgaaaaaactact |
495 |
Q |
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| T |
18372797 |
cccgtaacaagcacatggttctatgtggagtaacttgcag-cgaagatgttacaagctcaa-ggaaccattaatgatgtcgttaacatggaaaatctaac |
18372894 |
T |
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| Q |
496 |
gactaataattttgcattccc |
516 |
Q |
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| ||| |||||||||||||| |
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| T |
18372895 |
ggttaacaattttgcattccc |
18372915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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