View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10465_low_11 (Length: 263)
Name: NF10465_low_11
Description: NF10465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10465_low_11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 42709022 - 42708762
Alignment:
| Q |
1 |
ggagtagcattgcttggagcaggagaggacccagatggtttacccttaggagttttagggttttgaccaggaaaaacattcaaattccgccatttatcct |
100 |
Q |
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| T |
42709022 |
ggagtagcattgcttggagcaggagaggacccagatggtttacccttaggagttttagggttttgaccaggaaaaacattcaaattccgccatttatcct |
42708923 |
T |
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| Q |
101 |
gaacaaaaaatcaatcataaacatgataaataaaattgaattaatttcacaaacataaacaggacccnnnnnnnnnnnntcatt-ataaacacaaattga |
199 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
42708922 |
gaacaaaaaatcaatcataaacatgataaacaaaattgaattaatttcacaaacataaacaggaccc--aaaaaaaaaatcattgataaacacaaattga |
42708825 |
T |
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| Q |
200 |
atttcacaaaaacataaaccctaaccgtaattaagggaaaaaacgaacctttagatcgatattg |
263 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42708824 |
atttcacaaaaacataaaccctaaccgtaatt-agggaaaaaacgaacctttagatcgatattg |
42708762 |
T |
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