View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10465_low_13 (Length: 250)
Name: NF10465_low_13
Description: NF10465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10465_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 10360694 - 10360934
Alignment:
| Q |
1 |
cagcatgacctctaaaatcaattggacaaaaaagaaaatagcattgcctactttattctgaagcacaagtcatggttgataagttcaaaccnnnnnnntt |
100 |
Q |
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| T |
10360694 |
cagcatgacctctaaaatcaattggacaaaaaagaaaatagcattgcctactttattctgaagcacaagtcatggttgataagttcaaaccaaaaaaaat |
10360793 |
T |
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| Q |
101 |
ggacaataaaatacaaggaagcttgaataaa-tacttgccaaatgaaaataaatgcaagattccaaaacaaagaattctaggactttccaaataaggcac |
199 |
Q |
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||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10360794 |
ggacaataaaatacatggaagcttgaataaaatacttgccaaatgaaaataaatgcaagattccaaaacaaagaattctaggactttccaaataaggcac |
10360893 |
T |
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| Q |
200 |
gaattatagcaaggaagccaccacccatgagagccttcatc |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
10360894 |
gaattatagcaaggaagccaccacccatgagagccttcatc |
10360934 |
T |
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