View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10465_low_15 (Length: 239)
Name: NF10465_low_15
Description: NF10465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10465_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 28073440 - 28073662
Alignment:
| Q |
1 |
cgtagcttgctggaatccaatagaagttgaatgagaaaacaattttcaagacaaatctttttatgtatattcataagtaaactaaaacaaatacgcataa |
100 |
Q |
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| T |
28073440 |
cgtagcttgctggaatccaatagaagttgaatgagaaaacaattttcaagacaaatctttttatgtatattcataagtaaactaaaacaaatacgcataa |
28073539 |
T |
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| Q |
101 |
aaagcaaactatattaaacaagtccgaacactatttataatgatgatttaattttctatgaggaattaacatttctacaggttccaattttgtctctgat |
200 |
Q |
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| T |
28073540 |
aaagcaaactatattaaacaagtccgaacactatttataatgatgatttaattttctatgaggaattaacatttctacaggttccaattttgtctctgat |
28073639 |
T |
|
| Q |
201 |
ggatgggggtgaacctttcttag |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
28073640 |
ggatgggggtgaacctttcttag |
28073662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 6 - 191
Target Start/End: Original strand, 28090373 - 28090556
Alignment:
| Q |
6 |
cttgctggaatccaatagaagttgaatgagaaaacaattttcaagacaaatctttttatgtatattcataagtaaactaaaacaaatacgcataaaaagc |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||| |||||||||||| || ||| |||| | |
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| T |
28090373 |
cttgttggaatccaatagaagttgaatgagaaaacaattttcaagacaaaggttt--atgcatattcataatgaaactaaaacaatgacacattaaaatc |
28090470 |
T |
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| Q |
106 |
aaactatattaaacaagtccgaacactatttataatgatgatttaattttctatgaggaattaacatttctacaggttccaatttt |
191 |
Q |
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| T |
28090471 |
caattatattaaacatgtctgaatgctatttataatggtgatttaattttctacgatgatctaacatttgtacaggttcgaatttt |
28090556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 28034168 - 28034243
Alignment:
| Q |
13 |
gaatccaatagaagttgaatgagaaaacaattttcaagacaaatctttttatgtatattcataagtaaactaaaacaa |
90 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| | |||||| |||||||| ||||||||||||| |
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| T |
28034168 |
gaatccaatagaagttgaatgagaaaacaattttgaagacaaaac--tttatgcatattcatctttaaactaaaacaa |
28034243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 27915781 - 27915814
Alignment:
| Q |
13 |
gaatccaatagaagttgaatgagaaaacaatttt |
46 |
Q |
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| T |
27915781 |
gaatccaatataagttgaatgagaaaacaatttt |
27915814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 1439050 - 1439264
Alignment:
| Q |
7 |
ttgctggaatccaatagaagttgaatgagaaaacaattttcaagacaaatctttttatgtatattcataagtaaactaaaacaaatacgcataaaaagca |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||| || |||||||||| |||||||||||| ||||||| ||| |
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| T |
1439050 |
ttgctggaatccaatagaagttgaatgagaaaacaattttcaagacaaagc--tttgtgcatattcataatgaaactaaaacaattacgcattgaaaaac |
1439147 |
T |
|
| Q |
107 |
aactatattaaacaagtccgaacactatttataatgatgatttaattttctatgaggaattaacatttctacaggttccaattttgtctctgatggatgg |
206 |
Q |
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|| |||||||||||||||||||| |||||||||||| ||||||||| ||||||| || |||||||||||||||||| ||| || || ||||||| | |
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| T |
1439148 |
aattatattaaacaagtccgaacgttatttataatgaagatttaattctctatgatgatctaacatttctacaggttcgaatattttccatgatggacga |
1439247 |
T |
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| Q |
207 |
gggtgaacctttcttag |
223 |
Q |
| |
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|| ||||||| |||||| |
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| T |
1439248 |
ggatgaacctatcttag |
1439264 |
T |
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