View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10465_low_2 (Length: 475)

Name: NF10465_low_2
Description: NF10465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10465_low_2
NF10465_low_2
[»] chr5 (13 HSPs)
chr5 (1-452)||(38442798-38443246)
chr5 (308-452)||(38182939-38183083)
chr5 (308-452)||(38188048-38188192)
chr5 (308-452)||(38210165-38210309)
chr5 (302-452)||(38183191-38183341)
chr5 (302-452)||(38215016-38215166)
chr5 (308-448)||(38169517-38169657)
chr5 (308-448)||(38197447-38197587)
chr5 (308-452)||(38215274-38215417)
chr5 (302-452)||(38185300-38185450)
chr5 (302-452)||(38212907-38213057)
chr5 (323-452)||(38453249-38453380)
chr5 (412-450)||(38452129-38452167)
[»] chr4 (1 HSPs)
chr4 (1-57)||(53352659-53352715)


Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 38442798 - 38443246
Alignment:
Q  1 ggtaggtttgtgcaatatacttgacaatataattgtgataagttatatgccttatataaatggcatgggataagttacatggcttatcnnnnnnnnttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||        ||||    
T  38442798 ggtaggtttgtgcaatatacttgacaatataattgtgataagttatatgccttatataaatgggatgggataagttaaatggcttatcaaaaaaaattca 38442897  T
Q  101 cgtgaaaagttaacaaacaacatggataagaattttcacattcccatagtatttggaaaattcggttagtcaaactatatttgccatagtttatttattt 200  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||    
T  38442898 cgtgaaaagttaacaaacaacatg-ataagaattttcacattcccatagtatttggaaaattcggtaagtccaactatatt-gccatagtttatttattt 38442995  T
Q  201 aaaactctctttcattcccccctaatattttggaaattcagttaatgaaaatacatataaatttgaatatctcacaattcacatagttnnnnnnncagaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||        ||||    
T  38442996 aaaactctctttcattcccccctaatattttggaaattcagttaatg-aaatacatataaatttgaatatctcacaattcacatagttaaaaaaagagaa 38443094  T
Q  301 ggtcccaacagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgatta 400  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38443095 ggtcccaacagtttcatccgtcttttctcgaaccctcttttcattctcaataccctctcaaaacactttcaaacgatggagagagtcaagctcatgatta 38443194  T
Q  401 cctatggtggaaaaatccaacctaggcttactgctcttcatgatcatcgtcg 452  Q
    | ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38443195 cttatggtggagaaatccaacctaggcttactgctcttcatgatcatcgtcg 38443246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 308 - 452
Target Start/End: Complemental strand, 38183083 - 38182939
Alignment:
Q  308 acagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatgg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38183083 acagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatgg 38182984  T
Q  408 tggaaaaatccaacctaggcttactgctcttcatgatcatcgtcg 452  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  38182983 tggaaaaatccaacctaggcttactgctcttcatgatcatcgtcg 38182939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 308 - 452
Target Start/End: Original strand, 38188048 - 38188192
Alignment:
Q  308 acagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatgg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38188048 acagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatgg 38188147  T
Q  408 tggaaaaatccaacctaggcttactgctcttcatgatcatcgtcg 452  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  38188148 tggaaaaatccaacctaggcttactgctcttcatgatcatcgtcg 38188192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 308 - 452
Target Start/End: Complemental strand, 38210309 - 38210165
Alignment:
Q  308 acagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatgg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38210309 acagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatgg 38210210  T
Q  408 tggaaaaatccaacctaggcttactgctcttcatgatcatcgtcg 452  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  38210209 tggaaaaatccaacctaggcttactgctcttcatgatcatcgtcg 38210165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 302 - 452
Target Start/End: Original strand, 38183191 - 38183341
Alignment:
Q  302 gtcccaacagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattac 401  Q
    |||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38183191 gtcccaactgtttcagacgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattac 38183290  T
Q  402 ctatggtggaaaaatccaacctaggcttactgctcttcatgatcatcgtcg 452  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38183291 ctatggtggaaaaatccaacctaggcttactgctcttcatgatcatcgtcg 38183341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 302 - 452
Target Start/End: Complemental strand, 38215166 - 38215016
Alignment:
Q  302 gtcccaacagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattac 401  Q
    |||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38215166 gtcccaactgtttcagacgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattac 38215067  T
Q  402 ctatggtggaaaaatccaacctaggcttactgctcttcatgatcatcgtcg 452  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38215066 ctatggtggaaaaatccaacctaggcttactgctcttcatgatcatcgtcg 38215016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 308 - 448
Target Start/End: Original strand, 38169517 - 38169657
Alignment:
Q  308 acagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatgg 407  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  38169517 acagtttcacccgtcttttctcgaaccctctttacactctcagtaccctctctaaacactttcaaacgatggagagagtcaagctcatgattacctatgg 38169616  T
Q  408 tggaaaaatccaacctaggcttactgctcttcatgatcatc 448  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  38169617 tggaaaaatccaacctaggcttactgctcttcatgatcatc 38169657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 308 - 448
Target Start/End: Complemental strand, 38197587 - 38197447
Alignment:
Q  308 acagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatgg 407  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  38197587 acagtttcacccgtcttttctcgaaccctctttacactctcagtaccctctctaaacactttcaaacgatggagagagtcaagctcatgattacctatgg 38197488  T
Q  408 tggaaaaatccaacctaggcttactgctcttcatgatcatc 448  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  38197487 tggaaaaatccaacctaggcttactgctcttcatgatcatc 38197447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 308 - 452
Target Start/End: Original strand, 38215274 - 38215417
Alignment:
Q  308 acagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatgg 407  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38215274 acagtttcacccgtcttttcttgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatgg 38215373  T
Q  408 tggaaaaatccaacctaggcttactgctcttcatgatcatcgtcg 452  Q
    ||| |||||||||||||||||||||||||||||||||||||||||    
T  38215374 tgg-aaaatccaacctaggcttactgctcttcatgatcatcgtcg 38215417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 302 - 452
Target Start/End: Original strand, 38185300 - 38185450
Alignment:
Q  302 gtcccaacagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattac 401  Q
    |||||||| ||||||  |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  38185300 gtcccaactgtttcagacgtcttttctcgaatcctattttcactctcagtaccctctcaaaacactttcaaactatggagagagtcaagctcatgattac 38185399  T
Q  402 ctatggtggaaaaatccaacctaggcttactgctcttcatgatcatcgtcg 452  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  38185400 ctatggtgcaaaaatccaacctaggcttacttctcttcatgatcatcgtcg 38185450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 302 - 452
Target Start/End: Complemental strand, 38213057 - 38212907
Alignment:
Q  302 gtcccaacagtttcacccgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattac 401  Q
    |||||||| ||||||  |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  38213057 gtcccaactgtttcagacgtcttttctcgaatcctattttcactctcagtaccctctcaaaacactttcaaactatggagagagtcaagctcatgattac 38212958  T
Q  402 ctatggtggaaaaatccaacctaggcttactgctcttcatgatcatcgtcg 452  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  38212957 ctatggtgcaaaaatccaacctaggcttacttctcttcatgatcatcgtcg 38212907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 323 - 452
Target Start/End: Complemental strand, 38453380 - 38453249
Alignment:
Q  323 ttttctcgaaccctcttttcactct----cagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatcc 418  Q
    |||||||||| |||||||||| |||    | |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38453380 ttttctcgaatcctcttttcaatcttggtcggtaccctctcaaaac--tttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatcc 38453283  T
Q  419 aacctaggcttactgctcttcatgatcatcgtcg 452  Q
    |||| ||||||||| |||||||||||||||||||    
T  38453282 aaccaaggcttacttctcttcatgatcatcgtcg 38453249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 450
Target Start/End: Complemental strand, 38452167 - 38452129
Alignment:
Q  412 aaaatccaacctaggcttactgctcttcatgatcatcgt 450  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  38452167 aaaatccaacctagacttactgctcttcatgttcatcgt 38452129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 53352715 - 53352659
Alignment:
Q  1 ggtaggtttgtgcaatatacttgacaatataattgtgataagttatatgccttatat 57  Q
    ||||||||||||| |||||| ||  |||||||||| |||||||||||||||||||||    
T  53352715 ggtaggtttgtgcgatatacatggtaatataattgggataagttatatgccttatat 53352659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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