View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10465_low_3 (Length: 448)
Name: NF10465_low_3
Description: NF10465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10465_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 17 - 434
Target Start/End: Original strand, 13966898 - 13967315
Alignment:
| Q |
17 |
ccttcatgggttagtgacgggcatagacatcttcttgctggtggaaatgttaaaactaatgctgttgtggctcaagatgggagtggacagtttaagacat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13966898 |
ccttcatgggttagtgacgggcatagacatcttcttgctggtggaaatgttaaagctaatgctgttgtggctcaagatgggagtggacagtttaagacat |
13966997 |
T |
|
| Q |
117 |
taactgatgctcttaagactgttcctcctacaaatgcagcaccttttgtgatctatgttaaggctggtgtatataaagagactgttaatgttgctaagga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13966998 |
taactgatgctcttaagactgttcctcctacaaatgcagcaccttttgtgatctatgttaaggctggtgtatataaagagactgttaatgttgctaagga |
13967097 |
T |
|
| Q |
217 |
aatgaattatgttactgtcattggcgatggtcctaccaagaccaaattcactggtagcctcaactatgctgatggtgtcaacacttacaatactgcaact |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
13967098 |
aatgaattatgttactgtcattggcgatggtcctaccaagaccaaattcactggtagcctcaactatgctgatggtatcaacacttacaaaactgcaact |
13967197 |
T |
|
| Q |
317 |
ttcggtaagttctaaagaattcacgcaaaatgttttttagcggaaaatattattattgttagtattatgttgggagcgatgatcacaccttcgacctcat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13967198 |
ttcggtaagttctaaagaattcacgcaaaatgttttttagcggaaaatattattattgttagtattatgttgggagcgatgatcacaccttcgacctcat |
13967297 |
T |
|
| Q |
417 |
tatggtctcactcgttaa |
434 |
Q |
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|||||| ||||||||||| |
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| T |
13967298 |
tatggtatcactcgttaa |
13967315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 13977066 - 13977355
Alignment:
| Q |
17 |
ccttcatgggttagtgacgggcatagacatcttcttgctggtggaaatgttaaaactaatgctgttgtggctcaagatgggagtggacagtttaagacat |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13977066 |
ccttcatgggttagtgacgggcatagacatcttcttgctggtggaaatgttaaagctgatgctgttgtggctcaagatgggagtggacagtttaagacat |
13977165 |
T |
|
| Q |
117 |
taactgatgctcttaagactgttcctcctacaaatgcagcaccttttgtgatctatgttaaggctggtgtatataaagagactgttaatgttgctaagga |
216 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
13977166 |
taactgatgctcttaagactgttcctcctcaaaatgcagtaccttttgtgatccatgttaaggctggtgtttataaagagactgttaatgttgctaagga |
13977265 |
T |
|
| Q |
217 |
aatgaattatgttactgtcattggcgatggtcctaccaagaccaaattcactggtagcctcaactatgctgatggtgtcaacacttacaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
13977266 |
aatgaattatgttactgtcattggcgatggtcctaccaagaccaaattcactggtagcctcaactatgctgatggtatcaacacttacaa |
13977355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 17 - 339
Target Start/End: Original strand, 13959327 - 13959649
Alignment:
| Q |
17 |
ccttcatgggttagtgacgggcatagacatcttcttgctggtggaaatgttaaaactaatgctgttgtggctcaagatgggagtggacagtttaagacat |
116 |
Q |
| |
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|||| ||||||||| || ||||| |||| |||||||||| | || ||||||| |||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
13959327 |
cctttatgggttagcgaagggcaaagacgacttcttgctgaagcaactgttaaacctaatgttgttgtggctcaagatggaagtggacagtttaagacat |
13959426 |
T |
|
| Q |
117 |
taactgatgctcttaagactgttcctcctacaaatgcagcaccttttgtgatctatgttaaggctggtgtatataaagagactgttaatgttgctaagga |
216 |
Q |
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||||||||||| |||||||||||||| | | |||||| ||||||||| |||||||||| ||||| ||||| |||||||||||||| ||||||| |
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| T |
13959427 |
taactgatgctattaagactgttcctgccaataatgcacagaattttgtgatttatgttaaggaaggtgtttataatgagactgttaatgtgcctaagga |
13959526 |
T |
|
| Q |
217 |
aatgaattatgttactgtcattggcgatggtcctaccaagaccaaattcactggtagcctcaactatgctgatggtgtcaacacttacaatactgcaact |
316 |
Q |
| |
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||| || |||||| ||||||| ||||||||| | |||||||||||||||||||||||||| ||||| |||||| || ||||||| |||||||| |
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| T |
13959527 |
tatggcttttgttaccatcattggtgatggtcctgcaaagaccaaattcactggtagcctcaattatgcggatggtctcctaccttacaacactgcaacc |
13959626 |
T |
|
| Q |
317 |
ttcggtaagttctaaagaattca |
339 |
Q |
| |
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|||||||||| |||||||||| |
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| T |
13959627 |
ttcggtaagtagcaaagaattca |
13959649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 13968361 - 13968411
Alignment:
| Q |
242 |
gatggtcctaccaagaccaaattcactggtagcctcaactatgctgatggt |
292 |
Q |
| |
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||||||||| | |||||||||||||| ||||||||| | |||||||||||| |
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| T |
13968361 |
gatggtcctgcaaagaccaaattcaccggtagcctccattatgctgatggt |
13968411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 49865502 - 49865400
Alignment:
| Q |
225 |
atgttactgtcattggcgatggtcctaccaagaccaaattcactggtagcctcaactatgctgatggtgtcaacacttacaatactgcaactttcggtaa |
324 |
Q |
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|||||||| | |||||||||||||| || ||||||| ||| ||||| ||| | ||||||||||||||| | ||||||||||| ||||| |||||||| |
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| T |
49865502 |
atgttactattattggcgatggtcccacaaagaccatatttactggcagcaaaagctatgctgatggtgtgcagacttacaataccgcaacattcggtaa |
49865403 |
T |
|
| Q |
325 |
gtt |
327 |
Q |
| |
|
||| |
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|
| T |
49865402 |
gtt |
49865400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 388
Target Start/End: Original strand, 35868044 - 35868081
Alignment:
| Q |
351 |
ttttagcggaaaatattattattgttagtattatgttg |
388 |
Q |
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||||| |||||||||||| ||||||||||||||||||| |
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| T |
35868044 |
ttttaacggaaaatattaatattgttagtattatgttg |
35868081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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