View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10465_low_8 (Length: 313)
Name: NF10465_low_8
Description: NF10465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10465_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 6 - 277
Target Start/End: Original strand, 46774955 - 46775226
Alignment:
| Q |
6 |
aggtgcagcgggctttggaggcatcattcgaaatcatgaaggccgattcatgcttgggtttagtggatctattggttggtctaatatcttgtatgccgag |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46774955 |
aggtgcagcgggctttggaggcatcattcgaaatcatgaaggtcgattgatgcttgggcttagtggatctgttggttggtctaatatcttgtatgccgag |
46775054 |
T |
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| Q |
106 |
ttgatgggtttgcttaaaggtatgttgttttgttgggaagaggggtaccggaaagttcaatgttttactgatcccttggaaactattagactccttaatg |
205 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| |
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| T |
46775055 |
ttgatgggtttgcttaaaggtatgttgttgtgttgggaagaagggtaccggaaagttcaatgttttactgattccttgaaaactattagactcattaatg |
46775154 |
T |
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| Q |
206 |
aggcaaacacattatatcatctttatggtaatgaggttgctttgttgcgtaagctgctgcaacgtaattggc |
277 |
Q |
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| T |
46775155 |
aggcaaacacattatatcatctttatggtaatgaggttgctttgttgcgtaagctgctgcaacgtaattggc |
46775226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 45745200 - 45745128
Alignment:
| Q |
181 |
ttggaaactattagactccttaatgaggcaaacacattatatc----atctttatggtaatgaggttgctttg |
249 |
Q |
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| T |
45745200 |
ttggaaaccattagactcctcaacgaggcaaacacatcatatcatttatatatatggtaatgaggttgctttg |
45745128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 5 - 262
Target Start/End: Complemental strand, 31179752 - 31179495
Alignment:
| Q |
5 |
taggtgcagcgggctttggaggcatcattcgaaatcatgaaggccgattcatgcttgggtttagtggatctattggttggtctaatatcttgtatgccga |
104 |
Q |
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| T |
31179752 |
taggtgcagcgggctttggaggcatcattcgaaatcatgaaggtcgattcatgcttgggtttagtggatctgttggttggtctaatatcttgtatgccga |
31179653 |
T |
|
| Q |
105 |
gttgatgggtttgcttaaaggtatgttgttttgttgggaagaggggtaccggaaagttcaatgttttactgatcccttggaaactattagactccttaat |
204 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
31179652 |
gttgatgggtttgcttaaaggtatgttgttgtgttgggaagaagggtaccggaaagttcaatgttttacggattccttggaaactattagactccttaat |
31179553 |
T |
|
| Q |
205 |
gaggcaaacacattatatcatctttatggtaatgaggttgctttgttgcgtaagctgc |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31179552 |
gaggcaaacacattatatcatctttatggtaatgaggttgctttgttgcgtaagctgc |
31179495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 87 - 277
Target Start/End: Original strand, 24082372 - 24082563
Alignment:
| Q |
87 |
taatatcttgtatgccgagttgatgggtttgcttaaaggtatgttgttttgttgggaagaggggtaccggaaagttcaatgttttactgatcccttggaa |
186 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24082372 |
taatatcttgtatgccgagttgatgagtttgcttaaaggtatgttgttgtgttgggaagaggggtaccggaaagttcaatgttttactgattccttggaa |
24082471 |
T |
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| Q |
187 |
actattagactccttaat-gaggcaaacacattatatcatctttatggtaatgaggttgctttgttgcgtaagctgctgcaacgtaattggc |
277 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
24082472 |
actattagactccttaatggaggcaaacacattatatcatctttatggtaatgaggttgttttgttgcgtaagctgctgcaacgtaattggc |
24082563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 277
Target Start/End: Complemental strand, 9405921 - 9405652
Alignment:
| Q |
8 |
gtgcagcgggctttggaggcatcattcgaaatcatgaaggccgattcatgcttgggtttagtggatctattggttggtctaatatcttgtatgccgagtt |
107 |
Q |
| |
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|||||||||| || ||||||||||| ||||| |||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||| |
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| T |
9405921 |
gtgcagcggggttcggaggcatcatccgaaaccatgaaggtcgattcatgcttgggttttctggatctgttggttggtctaatatcttgtatgatgagtt |
9405822 |
T |
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| Q |
108 |
gatgggtttgcttaaaggtatgttgttttgttgggaagaggggtaccggaaagttcaatgttttactgatcccttggaaactattagactccttaatgag |
207 |
Q |
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| T |
9405821 |
gatgggtttgcttaaaggtatgttgttgtgttgggaagaggggtaccagaaagttcaatgttttaccgattccttggaaactattagaatccttaatgag |
9405722 |
T |
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| Q |
208 |
gcaaacacattatatcatctttatggtaatgaggttgctttgttgcgtaagctgctgcaacgtaattggc |
277 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9405721 |
gcaaacacattatatcatctttatggtaatgaggttgctttgttgcgtaagctgctgcaacgtaattggc |
9405652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 5 - 273
Target Start/End: Original strand, 38416504 - 38416759
Alignment:
| Q |
5 |
taggtgcagcgggctttggaggcatcattcgaaatcatgaaggccgattcatgcttgggtttagtggatctattggttggtctaatatcttgtatgccga |
104 |
Q |
| |
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|||||||||| || |||||||| |||||||| |||||||||| | ||||||||||| |||||||||||| ||||||||| || ||| || |||| || |
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| T |
38416504 |
taggtgcagcagggtttggaggtatcattcggaatcatgaagatcaattcatgcttgactttagtggatctgttggttggt--aacatcatgcatgctga |
38416601 |
T |
|
| Q |
105 |
gttgatgggtttgcttaaaggtatgttgttttgttgggaagaggggtaccggaaagttcaatgttttactgatcccttggaaactattagactccttaat |
204 |
Q |
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||||||||| ||||||| | | | ||||| ||||| | ||||||||| ||||||||| ||||| | ||| ||||||||||| ||| ||| |
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| T |
38416602 |
gttgatgggcttgcttacatgcaagttgt---gttggcacaaggggtaccagaaagttca--------ctgattcgttgtaaactattagatccctcaat |
38416690 |
T |
|
| Q |
205 |
gaggcaaacacattatatcatctttatggtaatgaggttgctttgttgcgtaagctgctgcaacgtaat |
273 |
Q |
| |
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||||||||||||||||||||| | ||||||||||||||||||||||||| | | || ||||||||||| |
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| T |
38416691 |
gaggcaaacacattatatcatttatatggtaatgaggttgctttgttgcatgaactagtgcaacgtaat |
38416759 |
T |
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