View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_high_12 (Length: 527)
Name: NF10466_high_12
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 15 - 512
Target Start/End: Original strand, 21270474 - 21270960
Alignment:
| Q |
15 |
gaagatataaaacaagcaaaatctcagattatagacatgaaaggatacgacaaacaatgaaccattgcaaacatgaaaagatatcccgatgtttctatat |
114 |
Q |
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| T |
21270474 |
gaagatataaaacaagcaaaatctcagattatagacacgaaaggatacgacaaacaatgaaccattgcaaacatgaaaagatatcccgatgtttctatat |
21270573 |
T |
|
| Q |
115 |
caccaaaaattggaactaaatctttcactatcatccatttgagcaacaattcatagcatataaagtttaatgaaaacagaaacccaaaagcaatacatat |
214 |
Q |
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| T |
21270574 |
caccaaaaattggaactaaaactttcactatcatccatttgaacaacaattcatagcatataaagtttaatgaaaacagaaacccaaaagcaatacatat |
21270673 |
T |
|
| Q |
215 |
atccaaacacatcaacaagataccacatgagcattccaatat-tcaatccaaagcatacattgttnnnnnnngagcactagttatcctcttttctcacac |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| || ||||||||||| || |
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| T |
21270674 |
atccaaacacatcaacaagataccacatgagcattccaacatgagcatccaaagcatacattgttaaaaaaaga------------ctcttttctcatac |
21270761 |
T |
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| Q |
314 |
ttgatttattatgtaaaacaaataataatcaatttgagattaagtccgcccttggtaaaacaacttattatgcaactaataatcgactagggattcattc |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21270762 |
ttgatttattatgtaaaacaaataataatcaatttgagattaattccacccttggtaaaacaacttattatgcaacaaataatcgactagggattcattc |
21270861 |
T |
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| Q |
414 |
cctctttggtaaaagatcttattttgcaactaatataagcacttataaacaagctaattccatgaacataaaacacagcaaaaacaaagccaaactttt |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21270862 |
cctctttggtaaaagatcttattttgcaactaatataagcacttataaacaagctaattccatgaacataaaacacagcaaaaacaaagccaaactttt |
21270960 |
T |
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