View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_high_14 (Length: 479)
Name: NF10466_high_14
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 15 - 462
Target Start/End: Original strand, 45991165 - 45991582
Alignment:
| Q |
15 |
agagagaaaatacaaaggtgtcgaatacaacgtgcaccaatgttataatatgtaacttctccttcttccaattattagttgtggggatcgattttgttgt |
114 |
Q |
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| T |
45991165 |
agagagaaaatacaaaggtgtcgaatacaacgtgcaccaatgtcataatatgtaacttctccttcttccaattattagttgtggggatcaattttgttgt |
45991264 |
T |
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| Q |
115 |
tctatcactgatatcttttgattggaaaatggagttattctaatctcgttctcctccttctagcggtggttgccttgttttaggatcagggttgttttgt |
214 |
Q |
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| T |
45991265 |
tctatcactgatatcttttgattggaaaatggagttgttctaatctcgttctcctccttctagcggtggttgccttgttttaggataagggttgttttgt |
45991364 |
T |
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| Q |
215 |
ccttgaagctgcgttctgggtttgtgtgttgtgattggattcgctctaatttgcgaattttctcaacgtttctgcgattgatgctgggttctgttttaaa |
314 |
Q |
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| T |
45991365 |
ccttgaagctgcgttctgggtttgtgtgttgtgattggattcgctcagatttgcgaattttctcaacgtttctgcgattgatgctgggttctgttttaaa |
45991464 |
T |
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| Q |
315 |
accactggttgtcctttgtttctttggtttggtttgcttattcaaaggtttgattatagttgtgttgggtttttgatttatggtttttgagagaaatttg |
414 |
Q |
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| T |
45991465 |
accactggttgtcctttgtttctttggttt----------------ggtttgattatagttgtgttgggtttt--------------tgagagaaatttg |
45991534 |
T |
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| Q |
415 |
gggaagaaaagagagttaactagtgttgctacacccatcaaaaatttg |
462 |
Q |
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| T |
45991535 |
ggaaagaaaagagagttaactagtgttgctacacccatcaaaaatttg |
45991582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 108 - 451
Target Start/End: Original strand, 46151141 - 46151487
Alignment:
| Q |
108 |
ttgttgttctatcactgatatcttttgattggaaaatggagttattctaatctcgttctcctccttctagcggtggttgccttgttttaggatcagggtt |
207 |
Q |
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| T |
46151141 |
ttgttgttctatcactgttatcttttgattggaaaatggagttgttctggtctcgttctcctccttctagcggtggttgccttgttttaggatcaggggt |
46151240 |
T |
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| Q |
208 |
gttttgtccttgaagctgcgttctgggtttg-----tgtgttgtgattggattcgctctaatttgcgaattttctcaacgtttctgcgattgatgctggg |
302 |
Q |
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| T |
46151241 |
gttttgtccttgaagctgcgttctgggtttgaatcttgttttgtgattggattcgctcagatttgcgaattttctcaacgtttatgcgattgatgctggg |
46151340 |
T |
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| Q |
303 |
ttctgttttaaaaccactggttgtcctttgtttctttggtttggtttgcttattcaaaggtttgattatagttgtgttgggtttttgatttatggttttt |
402 |
Q |
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| T |
46151341 |
ttctgttttaaaaccaccggctgtcctttgtttctttggtttggtttgcttattcaaaggtttgattatagttgtgttggg--tttgatttatggttttt |
46151438 |
T |
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| Q |
403 |
gagagaaatttggggaagaaaagagagttaactagtgttgctacaccca |
451 |
Q |
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| T |
46151439 |
gagagaaatctggggaagaaaagagagttaactagtgttgctacaccca |
46151487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 46151108 - 46151142
Alignment:
| Q |
53 |
aatgttataatatgtaacttctccttcttccaatt |
87 |
Q |
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||||| ||||||||||||||||||||||||||||| |
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| T |
46151108 |
aatgtcataatatgtaacttctccttcttccaatt |
46151142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 3871120 - 3871175
Alignment:
| Q |
53 |
aatgttataatatgtaacttctccttcttccaattattagttgtggggatcgattt |
108 |
Q |
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||||| |||||| |||| ||||||||||||||||| |||||||||||||| |||| |
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| T |
3871120 |
aatgtcataataagtaagttctccttcttccaattgatagttgtggggatcaattt |
3871175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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