View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10466_high_19 (Length: 457)
Name: NF10466_high_19
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_high_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 28937859 - 28938294
Alignment:
| Q |
1 |
tgaacgctctgcaagatcaataagcagggtatccattgccatgagaccaccagtgcaatcggcaatgcagctctttaggccaaggaggagagtctccatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
28937859 |
tgaacgctctgcaagatcaataagcagggtattcattgccatgagaccaccagtgcaatcggcaacgcagctctttaggc-aaggaggagagtctccatt |
28937957 |
T |
|
| Q |
101 |
gctatactccgtcctgatccaacatctgaattgactactccactccgtacctcagcttccaggtttatcagtggaagcagtgtatcggtaatgaggagcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28937958 |
gctatactccgtcctgatccaacatctgaattgactactccactccgtacctcagcttccaggtttatcagtggaagcagtgtatcgataatgaggagcc |
28938057 |
T |
|
| Q |
201 |
aaaaggttgatattcaaatttgctcgccccattgccagtgatgagaagcaactaatctaattaaccaactaggatagctaactgatataactaactttat |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28938058 |
aaaaggttgatattcaaatttgctcgtcccattgccagtgatgagaagcaactaatctaattaaccaactaggatagctaactgatataactaactttat |
28938157 |
T |
|
| Q |
301 |
atctaacaacaacaacaacnnnnnnncaggttaaaaattttatacaaggtagccaattctggggcagtgttcaatcgcaacaccacaaaaataaaaagta |
400 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28938158 |
atctaacaacaacaacaac--aaaaacaggttaaaaattttatacaaggttgccaattctggggcagtgttcaatcgcaacaccacaaaaataaaaagta |
28938255 |
T |
|
| Q |
401 |
taccacataaattgtgaaatctcttagaattgaatatag |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28938256 |
taccacataaattgtgaaatctcttagaattgaagatag |
28938294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 36899862 - 36900091
Alignment:
| Q |
13 |
aagatcaataagcagggtatccattgccatgagaccaccagtgcaatcggcaatgcagctctttaggccaaggaggagagtctccattgctatactccgt |
112 |
Q |
| |
|
|||| ||| |||||||| |||||||||||||||||||| | ||||| ||| |||| || ||| |||||||||||| ||||||||||||| ||||||| |
|
|
| T |
36899862 |
aagaccaagaagcagggcttccattgccatgagaccacctgcacaatcaacaacgcagatccttaagccaaggaggagggtctccattgctacactccgt |
36899961 |
T |
|
| Q |
113 |
cctgatccaacatctgaattgactactccactccgtacctcagcttccaggtttatcagtggaagcagtgtatcggta---atgaggagccaaa-aggtt |
208 |
Q |
| |
|
||||| |||||||||||| | ||||||||||||||||||||| |||| |||||| | |||||||||||||||| | | || |||||||||| ||| |
|
|
| T |
36899962 |
cctgagccaacatctgaaattactactccactccgtacctcaacttcaaggtttgccggtggaagcagtgtatcagcagccataaggagccaaaggggtc |
36900061 |
T |
|
| Q |
209 |
gatattcaaatttgctcgccccattgccag |
238 |
Q |
| |
|
| |||||||||||| ||||||||||||||| |
|
|
| T |
36900062 |
ggtattcaaatttgttcgccccattgccag |
36900091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University