View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_high_20 (Length: 453)
Name: NF10466_high_20
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 149 - 434
Target Start/End: Original strand, 35040165 - 35040449
Alignment:
| Q |
149 |
ttttgcaggcactaattctagcaggtactagacactaccgcagcgacattgacctggtctgtttctttacttcttaacaatcctgaagttttaaacaaag |
248 |
Q |
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| T |
35040165 |
ttttgcaggcactaattctagcaggtac-agacactaccgcagcgacattgacctggtctgtttctttacttcttaacaatcctgaagttttaaacaaag |
35040263 |
T |
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| Q |
249 |
ccattcaagaattagatacacaaattggtatggaaaatatggcaatagaatcagattttgcaaagtttgaatatctcaaagccattatcaaggaaacatt |
348 |
Q |
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| T |
35040264 |
ccattcaagaattagatacacaaattggtatggaaaatatggcaatagaatcagattttgcaaagtttgaatatctcaaagccattatcaaggaaacatt |
35040363 |
T |
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| Q |
349 |
gcgtctgtacccagccgcaccactcgatgtgcctcatgagtccattgaagattgtatcgttggtggataccacgtgccagccggta |
434 |
Q |
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| T |
35040364 |
gcgtctgtacccagccgcaccactcgatgtgcctcatgagtccattgaagattgtaccgttggtggataccacgtgccagccggta |
35040449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 149 - 429
Target Start/End: Original strand, 35032148 - 35032427
Alignment:
| Q |
149 |
ttttgcaggcactaattctagcaggtactagacactaccgcagcgacattgacctggtctgtttctttacttcttaacaatcctgaagttttaaacaaag |
248 |
Q |
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| T |
35032148 |
ttttgcaggcattaattctagcggctac-agatactaccgcaggaacattgacatggtcactatctttacttcttaacaatcctgaagttctaaacaaag |
35032246 |
T |
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| Q |
249 |
ccattcaagaattagatacacaaattggtatggaaaatatggcaatagaatcagattttgcaaagtttgaatatctcaaagccattatcaaggaaacatt |
348 |
Q |
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| T |
35032247 |
ccattcaagaattagatacacaaattggtatggaaaatatggcaataaaatcagatttggcaaagttggagtatctccaagccattatcaaggaaacatt |
35032346 |
T |
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| Q |
349 |
gcgtctgtacccagccgcaccactcgatgtgcctcatgagtccattgaagattgtatcgttggtggataccacgtgccagc |
429 |
Q |
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| T |
35032347 |
gcgtttgtacccacctggaccactcaatttgcctcatgagtctattgaggattgtaccattggtggataccacgtgccagc |
35032427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 149 - 434
Target Start/End: Original strand, 35026202 - 35026486
Alignment:
| Q |
149 |
ttttgcaggcactaattctagcaggtactagacactaccgcagcgacattgacctggtctgtttctttacttcttaacaatcctgaagttttaaacaaag |
248 |
Q |
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| T |
35026202 |
ttttgcaggcactaattctagcagctac-agacactacagcaggaacattgacttggactctatctttacttcttaacaatcgtgaggtcctaaacaaag |
35026300 |
T |
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| Q |
249 |
ccattcaagaattagatacacaaattggtatggaaaatatggcaatagaatcagattttgcaaagtttgaatatctcaaagccattatcaaggaaacatt |
348 |
Q |
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| T |
35026301 |
tcattcatgaattagatacacaaattggtaaggaaaagatggcaatacaaacagatttgacgaagttggagtatcttcaagccattatcaaagaaacatt |
35026400 |
T |
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| Q |
349 |
gcgtctgtacccagccgcaccactcgatgtgcctcatgagtccattgaagattgtatcgttggtggataccacgtgccagccggta |
434 |
Q |
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| T |
35026401 |
gcgtctatacccaccagcaccactgaatttgcctcacgagtctattgagaattgtaccattggtggataccacgtgccagctggta |
35026486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 254 - 426
Target Start/End: Original strand, 35047891 - 35048063
Alignment:
| Q |
254 |
caagaattagatacacaaattggtatggaaaatatggcaatagaatcagattttgca-aagtttgaatatctcaaagccattatcaaggaaacattgcgt |
352 |
Q |
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| T |
35047891 |
caagaattagatacacaaattggtagagaaaagatggtaatggaatcaga-tttgcacaagttagagtatcttcaagctattatcaaggaaacaatgcgc |
35047989 |
T |
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| Q |
353 |
ctgtacccagccgcaccactcgatgtgcctcatgagtccattgaagattgtatcgttggtggataccacgtgcc |
426 |
Q |
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| T |
35047990 |
ttgtgtccaaccgtgccactaaatgtgcctcatgagtccactgaagattgtaccattggtggatatcatgtgcc |
35048063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 35040032 - 35040105
Alignment:
| Q |
16 |
gaaggtataaacaactgaatgtcctaatagannnnnnnagttgcgacattataaatactcaactttcaattatc |
89 |
Q |
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| T |
35040032 |
gaaggtataaacaactgaacgtcctaatagatttttttagttgcgacattataaatactcaactttcagttatc |
35040105 |
T |
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