View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_high_23 (Length: 410)
Name: NF10466_high_23
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 16 - 399
Target Start/End: Complemental strand, 41544106 - 41543725
Alignment:
| Q |
16 |
caccatgaatttggatgcattgtgctagcttttgatcttcctcttgggtccatgctcctctattcattgtttcctttgtaggtccatcttttctgggtgc |
115 |
Q |
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| T |
41544106 |
caccatgaatttggatgcattgtgctagcttttgatcttcctcttgggtccatgctcctctattcattgtttcctttgtaggtccatcttttctgggtgc |
41544007 |
T |
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| Q |
116 |
cataacaatgagggaggttttttgtgttgttgagagtacgtaagactgatattgtggtggcacacaggcttttaaatgagtgtgaaaaagtattattaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41544006 |
cataacaatgagggaggttttttgtgttgttgagagtacgtaagactgatattgtggtggcacacaagcttttaaatgagtgtgaaaaagtattattaaa |
41543907 |
T |
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| Q |
216 |
ttaggtgagtccacgcatctacccttcatgagaagggaaacacaacaacccgttagctgtggaaatcacaaatgcttgggagttaggaaagcctttgttg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41543906 |
ttaggtgagtccacgcatctacccttcatgagaagggaaacacaacaacccgttagctgtggaaatcacaaatgcttgggagttaggaaagcctttgttg |
41543807 |
T |
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| Q |
316 |
tattaaatggactacgtggactgattttaaccgaatattaaagagtatattgttaataaacttgtatatattgatgaagttcat |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41543806 |
tattaaatggactacgtggactgattttaaccgaatattaaagag--tattgttaataaacttgtatatattgatgaagttcat |
41543725 |
T |
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