View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_high_24 (Length: 409)
Name: NF10466_high_24
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 2 - 391
Target Start/End: Complemental strand, 6083663 - 6083274
Alignment:
| Q |
2 |
cagctaacattgtcatcactgccaatgtaagacattgatgccaaagataactcttgcaatgcaacatgacttctaggctgctccgatgctacttggtttt |
101 |
Q |
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| T |
6083663 |
cagctaacattgtcatcactgccaatgtaagacattgatgccaaagataactcttgcaatgcaacatgacttctaggctgctccgatgctacttggtttt |
6083564 |
T |
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| Q |
102 |
tggaatcaatctcagattcaagttgcaacagttttgacgctgtttgcgaaagcattactcttgaaaattggacttcatttcgaatatcaagttccttttg |
201 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6083563 |
tggaatcaatctcagactcaagttgcaacagttttgacgctgtttgcgaaagcattactcttgaaaattggacttcatttcgaatatcaagttccttttg |
6083464 |
T |
|
| Q |
202 |
aagcactcgagcctcatacatcagagaagtattatccttctcaacagactctaatccaatcatcaatgcattacgatccacgtctgcttgattcaattgt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6083463 |
aagcactcgagcctcatacatcagagaagtattatccttctcaacagactctaatccaatcatcaatgcattacgatccacgtctgcttgattcaattgt |
6083364 |
T |
|
| Q |
302 |
cttctcagatcatcaatcaaattgtctttcgcgataatagatttgttaagataagaattttcaatcacagttttagcaagccttttactt |
391 |
Q |
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| T |
6083363 |
cttctcagatcatcaatcaaattgtctttcgcgataatagatttgttaagataagaattttcaatcacagttttagcaagccttttactt |
6083274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 321
Target Start/End: Original strand, 39107915 - 39108062
Alignment:
| Q |
174 |
cttcatttcgaatatcaagttccttttgaagcactcgagcctcatacatcagagaagtattatccttctcaacagactctaatccaatcatcaatgcatt |
273 |
Q |
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|||||||||| || || || ||||||| ||| ||||| ||||||| ||||||||| |||||| |||||| |||||||||| || ||||| |||| | |
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| T |
39107915 |
cttcatttcggatctccagctccttttcaagtactcggacctcatatgtcagagaagcattatctttctcagtggactctaatctaaccatcagtgcact |
39108014 |
T |
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| Q |
274 |
acgatccacgtctgcttgattcaattgtcttctcagatcatcaatcaa |
321 |
Q |
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| |||| | || |||||| ||||||||||| ||||||| |||||||| |
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| T |
39108015 |
atgatctgcctcagcttgagtcaattgtcttttcagatcctcaatcaa |
39108062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 39107391 - 39107438
Alignment:
| Q |
1 |
acagctaacattgtcatcactgccaatgtaagacattgatgccaaaga |
48 |
Q |
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||||||||| ||||||||||||||||| | |||| ||||||||||||| |
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| T |
39107391 |
acagctaaccttgtcatcactgccaatatcagacgttgatgccaaaga |
39107438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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