View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10466_high_3 (Length: 779)
Name: NF10466_high_3
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_high_3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 670; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 17 - 747
Target Start/End: Original strand, 40109252 - 40109988
Alignment:
| Q |
17 |
aatgtcaacaaagtttttaaaagagaagcatgaagcattcaagtaagttatgaactgccacaaaaggcaaggttttgcaattctgcattccgtacttact |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40109252 |
aatgtcaacaaagtttttaaaagagaagcatgaagcattcaagtaagttatgaactgccacaaaaggcaaggttttgcaattctgcattccgtacttact |
40109351 |
T |
|
| Q |
117 |
attccatcaaaagccccataagctgccattgcaataccaacaccagaaactccaattgcaggagttacaacatacttggtaaattccgccctataaaaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40109352 |
attccatcaaaagccccataagctgccattgcaataccaacaccagaaactccaattgcaggagttacaacatacttggtaaattccgccctataaaaaa |
40109451 |
T |
|
| Q |
217 |
gtgtttcattaccaaatagttatgaagaactgacacatacatcgaacacaacagtgacacatagacgaaataataattttaaaaaataaaagtaattgaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40109452 |
gtgtttcattaccaaatagttatgaagaactgacacatacattgaacacaacagtgacacatagacgaaataataattttaaaaaataaaagtaattgaa |
40109551 |
T |
|
| Q |
317 |
tgtaaccacatgcgtggtatatgacactagacacacattgaatatgaaatgttggtggtaaatggccgaatggt----acaaactacacac--nnnnnnn |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
40109552 |
tgtaaccacatgcgtggtatatgacactagacacacattgaatatgaaatgttggtggtaaatggccgaatggtacaaacaaactacacacaaaaaaaaa |
40109651 |
T |
|
| Q |
411 |
nnggacaccggtagaactcagaaccagtactattaatactagtagattatgaagacatatgatgttatggttcataagaaattaccatacaaatgctgct |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40109652 |
aaggacaccggtagaactcagaaccagtactattaatactagtagattgtgaagacatatgatgttatggttcataagaaattaccatacaaatgctgct |
40109751 |
T |
|
| Q |
511 |
tgtagacctgaatatgcaataagaggtatgatcaacaacatatttgcatcagagaatgaactcttgagtgatctacatagagacttcagggatgatgatt |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40109752 |
tgtagacctgaatatgcaataagaggtatgatcaacaacatatttgcatcagagaatgaactcttgagtgatctacatagagacttcagggatgatgatt |
40109851 |
T |
|
| Q |
611 |
cacttgcatcaatatcagtacctaaatttttgtattctcgtgttttattgctactccttttacaaagaaagcacattagtattgcaccaaaggtcataac |
710 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40109852 |
cacttgcatcaatatcagtacctaaatttttgtattctcgtgttttattgctactccttttacgaagaaagcacattagtattgcaccaaaggtcataac |
40109951 |
T |
|
| Q |
711 |
agaaaggaatacaacaaacaataaggttgtgcctttg |
747 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
40109952 |
agaaaggaatacaacaaacaataaggttgtgcctttg |
40109988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 109 - 227
Target Start/End: Original strand, 40147233 - 40147351
Alignment:
| Q |
109 |
tacttactattccatcaaaagccccataagctgccattgcaataccaacaccagaaactccaattgcaggagttacaacatacttggtaaattccgccct |
208 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||| ||||| |
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| T |
40147233 |
tacttactattccatcaaaagccccatatgctgccattgcaataccaacaccagaaacaccaattgctggagttacaacaaacttggtaaattcagccct |
40147332 |
T |
|
| Q |
209 |
ataaaaaagtgtttcatta |
227 |
Q |
| |
|
| ||||||| ||| |||| |
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|
| T |
40147333 |
gtgaaaaagtattttatta |
40147351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 110 - 227
Target Start/End: Original strand, 40153876 - 40153993
Alignment:
| Q |
110 |
acttactattccatcaaaagccccataagctgccattgcaataccaacaccagaaactccaattgcaggagttacaacatacttggtaaattccgcccta |
209 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||| ||||| |
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|
| T |
40153876 |
acttactattccatcaaaagccccatatactgccattgcaataccaacaccagaaacaccaatttctggagttacaacatacttggtaaattcagccctg |
40153975 |
T |
|
| Q |
210 |
taaaaaagtgtttcatta |
227 |
Q |
| |
|
| ||||||| ||| |||| |
|
|
| T |
40153976 |
tgaaaaagtattttatta |
40153993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 475 - 602
Target Start/End: Original strand, 40147428 - 40147555
Alignment:
| Q |
475 |
ttatggttcataagaaattaccatacaaatgctgcttgtagacctgaatatgcaataagaggtatgatcaacaacatatttgcatcagagaatgaactct |
574 |
Q |
| |
|
||||| |||||| |||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||| || |||||||| | || ||| |
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|
| T |
40147428 |
ttatgattcatatgaaattaccatacaaatgcttgttgtagacctgaatatgccataaggggtatgatcaacaacatcttcgcatcagacagtgcacttg |
40147527 |
T |
|
| Q |
575 |
tgagtgatctacatagagacttcaggga |
602 |
Q |
| |
|
|||||||| ||||||||||||| ||||| |
|
|
| T |
40147528 |
tgagtgatttacatagagacttaaggga |
40147555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 475 - 602
Target Start/End: Original strand, 40154070 - 40154197
Alignment:
| Q |
475 |
ttatggttcataagaaattaccatacaaatgctgcttgtagacctgaatatgcaataagaggtatgatcaacaacatatttgcatcagagaatgaactct |
574 |
Q |
| |
|
||||| |||||| |||||||||||||||| || |||||||||||||||||| ||||| ||||||||||||||||| || ||||||| | || || | |
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|
| T |
40154070 |
ttatgattcatatgaaattaccatacaaaagcgtgttgtagacctgaatatgctataaggggtatgatcaacaacatcttcacatcagacagtgcacccg |
40154169 |
T |
|
| Q |
575 |
tgagtgatctacatagagacttcaggga |
602 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
|
|
| T |
40154170 |
tgagtgatctacatagagacttaaggga |
40154197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 676 - 743
Target Start/End: Original strand, 40154265 - 40154332
Alignment:
| Q |
676 |
agaaagcacattagtattgcaccaaaggtcataacagaaaggaatacaacaaacaataaggttgtgcc |
743 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
40154265 |
agaaagcacgttaatattgcaccaaaggtcataacggaaaggaatacgacaaacaataaagttgtgcc |
40154332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 679 - 743
Target Start/End: Original strand, 40147626 - 40147690
Alignment:
| Q |
679 |
aagcacattagtattgcaccaaaggtcataacagaaaggaatacaacaaacaataaggttgtgcc |
743 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||| |
|
|
| T |
40147626 |
aagaacattagtattgcaccaaaggtcataacgaaaaggaatacaacaaacaataaagtggtgcc |
40147690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 2811269 - 2811306
Alignment:
| Q |
287 |
taataattttaaaaaataaaagtaattgaatgtaacca |
324 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
2811269 |
taataatttaagaaaataaaagtaattgaatgtaacca |
2811306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 286 - 328
Target Start/End: Complemental strand, 40584029 - 40583987
Alignment:
| Q |
286 |
ataataattttaaaaaataaaagtaattgaatgtaaccacatg |
328 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
40584029 |
ataataattttaaaaaataaaagtgattgaatgtaaacacatg |
40583987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 289 - 328
Target Start/End: Original strand, 22877102 - 22877141
Alignment:
| Q |
289 |
ataattttaaaaaataaaagtaattgaatgtaaccacatg |
328 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
22877102 |
ataatttttaaaaatgaaagtaattgaatgtaaccacatg |
22877141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 287 - 321
Target Start/End: Original strand, 37817268 - 37817302
Alignment:
| Q |
287 |
taataattttaaaaaataaaagtaattgaatgtaa |
321 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37817268 |
taataattttaaaaaatgaaagtaattgaatgtaa |
37817302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 328
Target Start/End: Original strand, 3943758 - 3943799
Alignment:
| Q |
287 |
taataattttaaaaaataaaagtaattgaatgtaaccacatg |
328 |
Q |
| |
|
||||||||| | ||||||||||| |||||||||||||||||| |
|
|
| T |
3943758 |
taataatttaagaaaataaaagtgattgaatgtaaccacatg |
3943799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 8217074 - 8217029
Alignment:
| Q |
286 |
ataataattttaaaaaataaaagtaattgaatgtaaccacatgcgt |
331 |
Q |
| |
|
|||||||||||| |||||| ||| ||||||||||||| |||||||| |
|
|
| T |
8217074 |
ataataattttagaaaatagaaggaattgaatgtaactacatgcgt |
8217029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 328
Target Start/End: Complemental strand, 8013889 - 8013848
Alignment:
| Q |
287 |
taataattttaaaaaataaaagtaattgaatgtaaccacatg |
328 |
Q |
| |
|
||||||||| |||||||| |||| |||||||||||||||||| |
|
|
| T |
8013889 |
taataatttgaaaaaatataagtgattgaatgtaaccacatg |
8013848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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