View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_high_30 (Length: 361)
Name: NF10466_high_30
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_high_30 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 15 - 361
Target Start/End: Original strand, 2488370 - 2488717
Alignment:
| Q |
15 |
actttattcttcaattattgatattctagtaataaaatatggcaccatatcactgattgattataatatttttgatacaggaaatggtttattttcttgt |
114 |
Q |
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| T |
2488370 |
actttattcttcaattattgatattctagtaataaaatatggcaccatatcattgattgattataatatttttgatacaggaaatggtttattttcttgt |
2488469 |
T |
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| Q |
115 |
tgatatttgggagcaagagggtctata----tgattgataaagcaaaaataggcatttgttcattctcctattggatggataattgtaaatggtgtaact |
210 |
Q |
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| T |
2488470 |
tgatatttgggagcaagagggtctatatgattgattgataaagc-aaaatagacatttcttcattctcctattggatggataattgtaaatggtgtaact |
2488568 |
T |
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| Q |
211 |
cttgcaaactattttgattttaattactaattggtaacaagaaatttaatcaatgtaaagaattag-nnnnnnnaggaagtagttaaattacttgttaac |
309 |
Q |
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| T |
2488569 |
cttgcaaactattttgattttaattac---ttggtaacaagaaatttaatcaatgtaaagaattagttttttttaggaagtagttaaattacttgttaac |
2488665 |
T |
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| Q |
310 |
atcgattattatatggtttcagttattgattttaacggatcaagttcatctc |
361 |
Q |
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| T |
2488666 |
atcgattattatatggtttcagttattgattttaacggatcaagttgatctc |
2488717 |
T |
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