View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10466_high_36 (Length: 331)

Name: NF10466_high_36
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10466_high_36
NF10466_high_36
[»] chr5 (4 HSPs)
chr5 (15-283)||(38816410-38816678)
chr5 (15-122)||(38821821-38821928)
chr5 (252-282)||(24906250-24906280)
chr5 (193-231)||(35665559-35665597)
[»] chr7 (7 HSPs)
chr7 (254-331)||(29763129-29763206)
chr7 (254-304)||(30813866-30813916)
chr7 (254-303)||(1433529-1433578)
chr7 (253-282)||(17852091-17852120)
chr7 (259-304)||(43250073-43250118)
chr7 (254-302)||(7438788-7438836)
chr7 (254-282)||(15680900-15680928)
[»] scaffold0007 (1 HSPs)
scaffold0007 (256-304)||(225199-225247)
[»] chr8 (1 HSPs)
chr8 (256-304)||(44067596-44067644)
[»] chr3 (3 HSPs)
chr3 (256-304)||(24204983-24205031)
chr3 (252-282)||(5440965-5440995)
chr3 (252-288)||(4466538-4466574)
[»] chr6 (1 HSPs)
chr6 (252-282)||(34073276-34073306)
[»] chr4 (1 HSPs)
chr4 (255-304)||(3947702-3947751)
[»] scaffold0450 (1 HSPs)
scaffold0450 (254-282)||(8564-8592)
[»] chr1 (1 HSPs)
chr1 (254-282)||(48547938-48547966)


Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 15 - 283
Target Start/End: Original strand, 38816410 - 38816678
Alignment:
Q  15 accatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaattgaatgttccacagcaagatcactcaaatcttcacctgaac 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816410 accatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaattgaatgttccacagcaagatcactcaaatcttcacctgaac 38816509  T
Q  115 acacaacaagaaagccttagaaagaaacttcacaaataaatatctcccataaatatctagcaccgagacttcatattaaaggtgtgtccagtgtccaaca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38816510 acacaacaagaaagccttagaaagaaacttcacaaataaatatctcccataaatatctagcaccgagacttcatattaaaggtgtgtgcagtgtccaaca 38816609  T
Q  215 gatgtcagtctccaacactatcacgattcacgaatataactatgaagcacggacactcctcgaattagc 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38816610 gatgtcagtctccaacactatcacgattcacgaatataactatgaatcacggacactcctcgaattagc 38816678  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 38821821 - 38821928
Alignment:
Q  15 accatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaattgaatgttccacagcaagatcactcaaatcttcacctgaac 114  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||| ||||| |  ||||  |||||||||||||| |||||||||||||||| ||    
T  38821821 accatttgtccctttctcacccacccaagccttcctccttcttctttagatgggcacaccgaatagtccacagcaagatcgctcaaatcttcacctggac 38821920  T
Q  115 acacaaca 122  Q
    ||||||||    
T  38821921 acacaaca 38821928  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 282
Target Start/End: Original strand, 24906250 - 24906280
Alignment:
Q  252 aactatgaagcacggacactcctcgaattag 282  Q
    |||||||||||||||||||||||||||||||    
T  24906250 aactatgaagcacggacactcctcgaattag 24906280  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 231
Target Start/End: Original strand, 35665559 - 35665597
Alignment:
Q  193 aaggtgtgtccagtgtccaacagatgtcagtctccaaca 231  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  35665559 aaggtgtgtccagtgtccaacacatgtcagtttccaaca 35665597  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 254 - 331
Target Start/End: Original strand, 29763129 - 29763206
Alignment:
Q  254 ctatgaagcacggacactcctcgaattagcagtgttctggtgtcgcacacgggccgtgtgaaactacacttaattatg 331  Q
    ||||||||||||||||||||||| |||||  |||| ||| ||||| ||||| | |||||| |||||||||||||||||    
T  29763129 ctatgaagcacggacactcctcggattaggcgtgtcctgatgtcggacacgtgtcgtgtgtaactacacttaattatg 29763206  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 30813916 - 30813866
Alignment:
Q  254 ctatgaagcacggacactcctcgaattagcagtgttctggtgtcgcacacg 304  Q
    ||||||||||||||||||||||| |||||  |||||||| ||||| |||||    
T  30813916 ctatgaagcacggacactcctcggattaggcgtgttctgatgtcggacacg 30813866  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 1433578 - 1433529
Alignment:
Q  254 ctatgaagcacggacactcctcgaattagcagtgttctggtgtcgcacac 303  Q
    ||||||||||||||||||||||| |||||  |||| ||||||||| ||||    
T  1433578 ctatgaagcacggacactcctcggattagacgtgtcctggtgtcggacac 1433529  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 282
Target Start/End: Complemental strand, 17852120 - 17852091
Alignment:
Q  253 actatgaagcacggacactcctcgaattag 282  Q
    ||||||||||||||||||||||||||||||    
T  17852120 actatgaagcacggacactcctcgaattag 17852091  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 43250118 - 43250073
Alignment:
Q  259 aagcacggacactcctcgaattagcagtgttctggtgtcgcacacg 304  Q
    ||||||||||||||||||||||||  |||| ||||||||| |||||    
T  43250118 aagcacggacactcctcgaattaggcgtgtcctggtgtcggacacg 43250073  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 7438836 - 7438788
Alignment:
Q  254 ctatgaagcacggacactcctcgaattagcagtgttctggtgtcgcaca 302  Q
    ||||||||||||||||||||| |||||||  |||| || ||||||||||    
T  7438836 ctatgaagcacggacactccttgaattaggcgtgtcctagtgtcgcaca 7438788  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 282
Target Start/End: Complemental strand, 15680928 - 15680900
Alignment:
Q  254 ctatgaagcacggacactcctcgaattag 282  Q
    |||||||||||||||||||||||||||||    
T  15680928 ctatgaagcacggacactcctcgaattag 15680900  T

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Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 304
Target Start/End: Original strand, 225199 - 225247
Alignment:
Q  256 atgaagcacggacactcctcgaattagcagtgttctggtgtcgcacacg 304  Q
    |||||||||||||||||||||||||||  |||| ||||||||| |||||    
T  225199 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcgaacacg 225247  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 304
Target Start/End: Complemental strand, 44067644 - 44067596
Alignment:
Q  256 atgaagcacggacactcctcgaattagcagtgttctggtgtcgcacacg 304  Q
    |||||||||||||||||||||||||||  |||| ||||||||| |||||    
T  44067644 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacg 44067596  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 304
Target Start/End: Original strand, 24204983 - 24205031
Alignment:
Q  256 atgaagcacggacactcctcgaattagcagtgttctggtgtcgcacacg 304  Q
    |||||||||||||||||||||||||||  |||| ||||||||| |||||    
T  24204983 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacg 24205031  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 282
Target Start/End: Original strand, 5440965 - 5440995
Alignment:
Q  252 aactatgaagcacggacactcctcgaattag 282  Q
    |||||||||||||||||||||||||||||||    
T  5440965 aactatgaagcacggacactcctcgaattag 5440995  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 4466538 - 4466574
Alignment:
Q  252 aactatgaagcacggacactcctcgaattagcagtgt 288  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  4466538 aactatgaagcacggacactcctcgaataagccgtgt 4466574  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 282
Target Start/End: Original strand, 34073276 - 34073306
Alignment:
Q  252 aactatgaagcacggacactcctcgaattag 282  Q
    |||||||||||||||||||||||||||||||    
T  34073276 aactatgaagcacggacactcctcgaattag 34073306  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 3947702 - 3947751
Alignment:
Q  255 tatgaagcacggacactcctcgaattagcagtgttctggtgtcgcacacg 304  Q
    |||||||||||||||||||||| |||||  |||| ||||||||| |||||    
T  3947702 tatgaagcacggacactcctcggattaggtgtgtcctggtgtcggacacg 3947751  T

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Target: scaffold0450 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 282
Target Start/End: Original strand, 8564 - 8592
Alignment:
Q  254 ctatgaagcacggacactcctcgaattag 282  Q
    |||||||||||||||||||||||||||||    
T  8564 ctatgaagcacggacactcctcgaattag 8592  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 282
Target Start/End: Original strand, 48547938 - 48547966
Alignment:
Q  254 ctatgaagcacggacactcctcgaattag 282  Q
    |||||||||||||||||||||||||||||    
T  48547938 ctatgaagcacggacactcctcgaattag 48547966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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