View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10466_high_48 (Length: 288)

Name: NF10466_high_48
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10466_high_48
NF10466_high_48
[»] chr5 (22 HSPs)
chr5 (1-288)||(13287427-13287723)
chr5 (213-288)||(22013369-22013445)
chr5 (223-288)||(19552571-19552637)
chr5 (217-288)||(21191084-21191156)
chr5 (213-283)||(19820427-19820498)
chr5 (207-288)||(6247572-6247653)
chr5 (226-279)||(36642799-36642853)
chr5 (204-288)||(2436875-2436953)
chr5 (217-280)||(15382436-15382500)
chr5 (217-288)||(21522709-21522781)
chr5 (217-288)||(21533275-21533347)
chr5 (212-288)||(40000563-40000640)
chr5 (238-288)||(14674249-14674300)
chr5 (225-288)||(31084296-31084354)
chr5 (213-287)||(42469176-42469251)
chr5 (250-288)||(12641667-12641705)
chr5 (228-288)||(24906329-24906390)
chr5 (213-285)||(37328875-37328948)
chr5 (229-288)||(3751958-3752017)
chr5 (256-288)||(7677704-7677736)
chr5 (217-288)||(41995430-41995502)
chr5 (256-288)||(42893359-42893391)
[»] chr2 (16 HSPs)
chr2 (213-288)||(20539702-20539778)
chr2 (223-288)||(28412315-28412381)
chr2 (213-287)||(38117188-38117257)
chr2 (213-288)||(21374727-21374804)
chr2 (213-288)||(19536425-19536502)
chr2 (223-288)||(15657829-15657895)
chr2 (231-288)||(30404878-30404936)
chr2 (213-280)||(21624221-21624289)
chr2 (217-288)||(34337204-34337276)
chr2 (217-288)||(11670714-11670786)
chr2 (233-288)||(12940963-12941019)
chr2 (226-281)||(15972841-15972897)
chr2 (213-288)||(21782846-21782922)
chr2 (233-288)||(30335392-30335448)
chr2 (217-288)||(31284007-31284079)
chr2 (213-245)||(33519741-33519773)
[»] scaffold0223 (1 HSPs)
scaffold0223 (213-288)||(20127-20203)
[»] chr8 (23 HSPs)
chr8 (213-288)||(4298914-4298989)
chr8 (217-288)||(22651935-22652007)
chr8 (225-285)||(29510335-29510396)
chr8 (217-288)||(2572084-2572156)
chr8 (213-288)||(11944620-11944696)
chr8 (213-288)||(13436992-13437068)
chr8 (213-288)||(41838151-41838227)
chr8 (217-283)||(4673458-4673525)
chr8 (223-288)||(22197770-22197836)
chr8 (213-288)||(11927114-11927190)
chr8 (213-288)||(25192375-25192451)
chr8 (213-288)||(28642363-28642439)
chr8 (217-288)||(31556956-31557027)
chr8 (217-288)||(36934629-36934701)
chr8 (231-288)||(20873042-20873100)
chr8 (252-288)||(949292-949328)
chr8 (233-288)||(3677761-3677817)
chr8 (217-280)||(24857968-24858032)
chr8 (213-245)||(40332160-40332192)
chr8 (256-288)||(41831968-41832000)
chr8 (223-288)||(18170510-18170576)
chr8 (223-288)||(18634078-18634144)
chr8 (217-288)||(24362230-24362302)
[»] chr6 (30 HSPs)
chr6 (223-285)||(9107401-9107464)
chr6 (223-288)||(426542-426608)
chr6 (216-288)||(853887-853960)
chr6 (204-288)||(8365547-8365631)
chr6 (213-288)||(12696280-12696355)
chr6 (217-288)||(16766656-16766728)
chr6 (217-288)||(5970136-5970202)
chr6 (217-288)||(4118361-4118433)
chr6 (217-288)||(7938075-7938147)
chr6 (223-288)||(34595099-34595165)
chr6 (217-285)||(8777004-8777073)
chr6 (213-288)||(31959115-31959190)
chr6 (213-279)||(3398574-3398641)
chr6 (223-288)||(3209347-3209413)
chr6 (223-288)||(7977858-7977924)
chr6 (223-287)||(5732539-5732604)
chr6 (213-281)||(6389698-6389767)
chr6 (224-285)||(12868706-12868762)
chr6 (223-286)||(5000656-5000720)
chr6 (213-288)||(7930260-7930336)
chr6 (217-288)||(8713944-8714011)
chr6 (217-288)||(9027137-9027209)
chr6 (238-288)||(17841617-17841668)
chr6 (246-288)||(7801184-7801226)
chr6 (233-281)||(15489767-15489816)
chr6 (231-287)||(16833281-16833338)
chr6 (213-288)||(9658835-9658910)
chr6 (213-288)||(17341692-17341767)
chr6 (256-288)||(25010230-25010262)
chr6 (213-288)||(25038099-25038175)
[»] chr1 (25 HSPs)
chr1 (212-288)||(15323117-15323194)
chr1 (223-285)||(40917716-40917779)
chr1 (224-288)||(398793-398858)
chr1 (219-279)||(48040499-48040560)
chr1 (213-288)||(5927368-5927444)
chr1 (213-288)||(38078689-38078766)
chr1 (217-288)||(1486737-1486809)
chr1 (217-288)||(6612199-6612271)
chr1 (250-288)||(9103633-9103671)
chr1 (216-288)||(10572617-10572690)
chr1 (222-288)||(1262848-1262915)
chr1 (217-280)||(31694748-31694810)
chr1 (250-288)||(113292-113330)
chr1 (223-288)||(2896149-2896215)
chr1 (231-288)||(48450615-48450673)
chr1 (225-285)||(16297314-16297375)
chr1 (223-288)||(22881644-22881704)
chr1 (213-242)||(35702657-35702686)
chr1 (256-288)||(1864908-1864940)
chr1 (256-288)||(23738677-23738709)
chr1 (213-245)||(30749797-30749829)
chr1 (213-245)||(30771248-30771280)
chr1 (213-288)||(31014998-31015074)
chr1 (213-241)||(39130843-39130871)
chr1 (256-288)||(40258961-40258993)
[»] scaffold0027 (1 HSPs)
scaffold0027 (217-288)||(46641-46713)
[»] chr7 (18 HSPs)
chr7 (217-288)||(24339601-24339673)
chr7 (213-288)||(43027497-43027573)
chr7 (217-288)||(26733263-26733335)
chr7 (213-288)||(27944996-27945072)
chr7 (213-281)||(24105634-24105702)
chr7 (213-288)||(7328719-7328795)
chr7 (217-288)||(11061104-11061176)
chr7 (223-286)||(1433419-1433483)
chr7 (256-288)||(7438705-7438737)
chr7 (238-288)||(18215214-18215265)
chr7 (223-288)||(11722126-11722192)
chr7 (223-288)||(19206015-19206081)
chr7 (250-288)||(25481895-25481933)
chr7 (246-288)||(35861953-35861995)
chr7 (223-288)||(43249958-43250024)
chr7 (220-288)||(2425761-2425830)
chr7 (224-288)||(13770657-13770722)
chr7 (256-288)||(9408362-9408394)
[»] chr4 (13 HSPs)
chr4 (217-288)||(23293014-23293086)
chr4 (213-288)||(11651162-11651238)
chr4 (217-288)||(27706205-27706277)
chr4 (217-288)||(12895302-12895374)
chr4 (213-288)||(28084476-28084553)
chr4 (213-284)||(12628617-12628688)
chr4 (217-280)||(20633444-20633508)
chr4 (217-288)||(35158013-35158085)
chr4 (213-280)||(7251663-7251725)
chr4 (223-288)||(21945468-21945534)
chr4 (213-242)||(482306-482335)
chr4 (232-288)||(14126139-14126196)
chr4 (225-288)||(20521877-20521941)
[»] scaffold0053 (1 HSPs)
scaffold0053 (217-283)||(8757-8824)
[»] scaffold0003 (1 HSPs)
scaffold0003 (223-288)||(241559-241625)
[»] chr3 (25 HSPs)
chr3 (223-288)||(3164053-3164119)
chr3 (223-288)||(15796322-15796388)
chr3 (223-288)||(28917966-28918032)
chr3 (213-288)||(8587049-8587125)
chr3 (213-288)||(55401030-55401106)
chr3 (223-287)||(10335315-10335380)
chr3 (250-288)||(10268514-10268552)
chr3 (223-288)||(24205069-24205135)
chr3 (217-288)||(750646-750719)
chr3 (217-288)||(14747526-14747593)
chr3 (217-285)||(21479083-21479146)
chr3 (226-285)||(25093470-25093530)
chr3 (214-288)||(8383213-8383288)
chr3 (227-288)||(3610602-3610664)
chr3 (250-288)||(4987319-4987357)
chr3 (207-288)||(25064859-25064940)
chr3 (250-288)||(40052325-40052363)
chr3 (213-246)||(8842285-8842318)
chr3 (251-288)||(14979175-14979212)
chr3 (231-283)||(26492238-26492291)
chr3 (213-288)||(14216848-14216923)
chr3 (213-288)||(14222977-14223052)
chr3 (225-288)||(14829657-14829720)
chr3 (223-286)||(41961680-41961744)
chr3 (256-288)||(55212962-55212994)
[»] scaffold0306 (1 HSPs)
scaffold0306 (213-288)||(13355-13431)
[»] scaffold0152 (1 HSPs)
scaffold0152 (213-288)||(21896-21972)
[»] scaffold0021 (1 HSPs)
scaffold0021 (217-288)||(130441-130513)
[»] scaffold0018 (1 HSPs)
scaffold0018 (213-283)||(178852-178923)
[»] scaffold0007 (1 HSPs)
scaffold0007 (223-288)||(225296-225362)
[»] scaffold0171 (1 HSPs)
scaffold0171 (213-288)||(23376-23451)
[»] scaffold0103 (1 HSPs)
scaffold0103 (238-288)||(51791-51842)
[»] scaffold0019 (1 HSPs)
scaffold0019 (213-280)||(71684-71746)
[»] scaffold0168 (1 HSPs)
scaffold0168 (223-288)||(21008-21074)
[»] scaffold0050 (1 HSPs)
scaffold0050 (254-288)||(70275-70309)
[»] scaffold0652 (1 HSPs)
scaffold0652 (217-285)||(493-562)
[»] scaffold0722 (1 HSPs)
scaffold0722 (252-288)||(7060-7096)
[»] scaffold0020 (1 HSPs)
scaffold0020 (213-288)||(135340-135416)


Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 13287723 - 13287427
Alignment:
Q  1 ttcaactaattcattcagcatttttt--caatatttctattcattaagctccatgtatgagaacactaacattttgagctcataggcagttgatgggaga 98  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||    
T  13287723 ttcaactaattcattcagcattttttttcaatatttctattcattaagctccttgtatgagagcactaacattttgagctcataggcaattgatgggaga 13287624  T
Q  99 acagctttatggtttgagtatcagaaacctacaagacctagagagtcaactggagcttagcctccaaggagttcgcatgaaaaaggtcaagttcctatta 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  13287623 acagctttatggtttgagtatcagaaacctacaagacctagagagtcagctggaacttagcctacaaggagttcgcatgaaaaaggtcaagttcctatta 13287524  T
Q  199 cttactacctatgaaagcacggatacgg------acaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||||||||||||||||||||||      ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  13287523 cttactacctatgaaagcacggatacggacacggacaccggacacgacacggacactaacacgtcgacacagataataatttgaaaaaatcacataa 13287427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 22013369 - 22013445
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| |||||||| |||||||||| |||||| ||||||    
T  22013369 aagcacggatacggacaccggacacgacacggacactgacacgccgacacagctaataatttggaaaaattacataa 22013445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 19552637 - 19552571
Alignment:
Q  223 acggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||| ||||| |||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||    
T  19552637 acggccaccgaacacgacacggacactgacacgccgacacagttaataatttgaaaaaatcacataa 19552571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 21191156 - 21191084
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| || |||||||||||||||||||| ||| ||| | |||||||| ||||||||||||||||||||||||    
T  21191156 acggacactgacaccggacacgacacggacactgacatgccgacacagctaataatttgaaaaaatcacataa 21191084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 283
Target Start/End: Complemental strand, 19820498 - 19820427
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatca 283  Q
    ||||||||||||||||||||||||||||||||| ||| ||||  |||||| | ||||||||||| |||||||    
T  19820498 aagcacggatacggacaccggacacgacacggacactgacactccgacaccgctaataatttgagaaaatca 19820427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 288
Target Start/End: Original strand, 6247572 - 6247653
Alignment:
Q  207 ctatgaaagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||| ||||||| |||||||||||||||| ||| | ||| ||||| |||||||  ||||||||||||||||||||||||    
T  6247572 ctatgaaa-cacggatgcggacaccggacacgatacgcacactgacacgccgacacatctaataatttgaaaaaatcacataa 6247653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 36642853 - 36642799
Alignment:
Q  226 gacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaa 279  Q
    |||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||    
T  36642853 gacaccggacacgacacggacactgacacgccgacacagttaataatttgaaaaa 36642799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 2436875 - 2436953
Alignment:
Q  204 tacctatgaaagcacggatacggacaccggacacgacacggaactaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||| |||||||||||||||||||||||||||| ||     |||| |||||| | |||||||||| |||||||||||||    
T  2436875 tacctatgaa-gcacggatacggacaccggacacgacactga-----cacgccgacaccgctaataatttgcaaaaatcacataa 2436953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 280
Target Start/End: Original strand, 15382436 - 15382500
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaa 280  Q
    ||||| ||||||||||||||||||||||| | | ||||| |||||||| ||||||||||||||||    
T  15382436 acggacacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaa 15382500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 21522709 - 21522781
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| |||| |||||||||||||||||| ||| ||||| |||||||| ||||||||| ||||||| ||||||    
T  21522709 acggacacggtcaccggacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataa 21522781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 21533275 - 21533347
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| |||| |||||||||||||||||| ||| ||||| |||||||| ||||||||| ||||||| ||||||    
T  21533275 acggacacggtcaccggacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataa 21533347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 288
Target Start/End: Complemental strand, 40000640 - 40000563
Alignment:
Q  212 aaagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||| |  ||  |||||||||| ||| ||| ||||||||  |||||||||||||||||||||||||    
T  40000640 aaagcacggatacggatattgggtacgacacggacactgacatgtcgacactcttaataatttgaaaaaatcacataa 40000563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 238 - 288
Target Start/End: Original strand, 14674249 - 14674300
Alignment:
Q  238 gacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||| ||| ||||| |||||||| ||||||||||||||||||||||||    
T  14674249 gacacggacactgacacgccgacacagctaataatttgaaaaaatcacataa 14674300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 31084296 - 31084354
Alignment:
Q  225 ggacaccggacacgacacggaactaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||||| ||     |||| |||||||| ||||||||||||||||||||||||    
T  31084296 ggacaccggacacgacactga-----cacgccgacacagctaataatttgaaaaaatcacataa 31084354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 287
Target Start/End: Original strand, 42469176 - 42469251
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacata 287  Q
    ||||||||| |||||||||| |||||||||||| | | ||||| |||||| | ||||||||||| ||||| |||||    
T  42469176 aagcacggacacggacaccgaacacgacacggataatgacacgccgacacggataataatttgagaaaatgacata 42469251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 12641667 - 12641705
Alignment:
Q  250 acacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  12641667 acacgtcgacatagttaataatttaaaaaaatcacataa 12641705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 24906390 - 24906329
Alignment:
Q  228 caccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||| | ||| ||||| | |||||| ||||||||||||||||| ||||||    
T  24906390 caccggacacgacacgaacactgacacgccaacacagataataatttgaaaaaatgacataa 24906329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 285
Target Start/End: Complemental strand, 37328948 - 37328875
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcaca 285  Q
    ||||||||| |||||||||| |||||||||||| ||| | ||  ||||||||  ||||||||| ||||||||||    
T  37328948 aagcacggacacggacaccgaacacgacacggacactgatacaccgacacagcaaataatttgtaaaaatcaca 37328875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 288
Target Start/End: Complemental strand, 3752017 - 3751958
Alignment:
Q  229 accggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||||||||| | ||||||| ||||||||| | |||||||||| ||||||||||||    
T  3752017 accggacacgacacgaacactaacaagtcgacacact-aataatttgagaaaatcacataa 3751958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 7677704 - 7677736
Alignment:
Q  256 cgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||| ||||||||||||||||||||||||    
T  7677704 cgacacagctaataatttgaaaaaatcacataa 7677736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 41995430 - 41995502
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| |||||||| ||| ||||||| || ||| ||||| |||||||  |||||||| |||||||||||||||    
T  41995430 acggacacggacactggatacgacacagacactgacacgccgacacaactaataattcgaaaaaatcacataa 41995502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 42893359 - 42893391
Alignment:
Q  256 cgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||| ||||||||||||||||||||||||    
T  42893359 cgacacagctaataatttgaaaaaatcacataa 42893391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 20539778 - 20539702
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||||| |||||||||||||| ||| |||||||||||||| ||||||||||||||||||| ||||    
T  20539778 aagcacggatacggacactggacacgacacggacactgacacgtcgacacagctaataatttgaaaaaatcatataa 20539702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 28412315 - 28412381
Alignment:
Q  223 acggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||| ||||||||||||| ||||||||||| |||| ||||||||||||| ||||||||||||    
T  28412315 acggacaccagacacgacacggacactaacacgtcaacaccgttaataatttgataaaatcacataa 28412381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 287
Target Start/End: Complemental strand, 38117257 - 38117188
Alignment:
Q  213 aagcacggatacggacaccggacacgacacggaactaacacgtcgacacagttaataatttgaaaaaatcacata 287  Q
    |||||||||||||||||||||||||||||| ||     |||| |||||||| |||||||||||||||||||||||    
T  38117257 aagcacggatacggacaccggacacgacactga-----cacgccgacacagctaataatttgaaaaaatcacata 38117188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 21374804 - 21374727
Alignment:
Q  213 aagcacggatacggacaccggacac--gacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||||| ||||||  |||||||| ||||||||| |||||||| ||||||||||||||||| ||||||    
T  21374804 aagcacggatacggacac-ggacaccggacacggacactaacacgccgacacagctaataatttgaaaaaattacataa 21374727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 19536502 - 19536425
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttg-aaaaaatcacataa 288  Q
    |||||| |||||||||||||||||||||||||| | | ||||| |||||||  |||||||||| ||||||||||||||    
T  19536502 aagcacagatacggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaaatcacataa 19536425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 15657829 - 15657895
Alignment:
Q  223 acggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||| |||||||||||||||||| ||||||||| |||| ||  |||||||||| |||||||||||||    
T  15657829 acggtcaccggacacgacacggacactaacacgccgactcaactaataatttgtaaaaatcacataa 15657895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 30404936 - 30404878
Alignment:
Q  231 cggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||| |||||||| ||| ||||| |||||| ||||||||||||||||||||||||||    
T  30404936 cggacatgacacggacactgacacgccgacacggttaataatttgaaaaaatcacataa 30404878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 21624221 - 21624289
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaa 280  Q
    |||| ||||||||||||||| ||||||||| || ||| ||||| |||||||| ||||||||| ||||||    
T  21624221 aagcccggatacggacaccgaacacgacacagacactgacacgccgacacagctaataattttaaaaaa 21624289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 34337276 - 34337204
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| ||||| |||| | |||||||||| | | ||||| |||||||||| ||||||||||||||||||||||    
T  34337276 acggacacggataccgtatacgacacggacattgacacgccgacacagttgataatttgaaaaaatcacataa 34337204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 11670714 - 11670786
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||| | ||||||  || ||| |||||||||| |   ||||||||||||||||||||||||    
T  11670714 acggatacggacaccgaatacgacatagacactgacacgtcgacgccactaataatttgaaaaaatcacataa 11670786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 12941019 - 12940963
Alignment:
Q  233 gacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||||||| ||| |||||| ||||||  ||||||||||||||||||| ||||    
T  12941019 gacacgacacggacactgacacgttgacacaactaataatttgaaaaaatcatataa 12940963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 281
Target Start/End: Original strand, 15972841 - 15972897
Alignment:
Q  226 gacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaat 281  Q
    |||||| || |||||||||| ||| ||||| ||||||| ||||||||||||||||||    
T  15972841 gacaccagatacgacacggacactgacacgccgacacaattaataatttgaaaaaat 15972897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 21782922 - 21782846
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||| |||| ||||| |||||||||||  | ||| ||||| |||||| | ||||||||||| ||||||||||||    
T  21782922 aagcacgaatacagacactggacacgacacaaacactgacacgccgacactgctaataatttgagaaaatcacataa 21782846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 30335392 - 30335448
Alignment:
Q  233 gacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||||||| |||| |||| |||||||  ||||||||||||||||| ||||||    
T  30335392 gacacgacacggacactagcacgccgacacaactaataatttgaaaaaatgacataa 30335448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 31284007 - 31284079
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| ||||||||||||||  ||||| | ||| ||||| |||||| | ||||||||||| ||||||||||||    
T  31284007 acggacacggacaccggacataacacgtacacttacacgccgacactgctaataatttgagaaaatcacataa 31284079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 33519741 - 33519773
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga 245  Q
    |||||||||||||||||||||||||||| ||||    
T  33519741 aagcacggatacggacaccggacacgacgcgga 33519773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 20127 - 20203
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||| |||||||||||||||||||||||||| | | ||||| |||||||| ||||||||||||||||||||||||    
T  20127 aagcacagatacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataa 20203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 4298989 - 4298914
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||||| |||||| ||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||    
T  4298989 aagcacggatatggacac-ggacacgacacagatactaacacgccgacacagttaataatttgaaaaaatcacataa 4298914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 22651935 - 22652007
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| || |||||||||||||||||||| ||| ||||| |||||||| ||||||||||||||||||||||||    
T  22651935 acggacactgacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacataa 22652007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 29510396 - 29510335
Alignment:
Q  225 ggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcaca 285  Q
    ||||||||||||||||||||| ||| ||||| |||||||| |||||||||||||||||||||    
T  29510396 ggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcaca 29510335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 2572156 - 2572084
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| |||||||| |||||||||||||| ||  |||||||||||||  ||||||||||||||||||||||||    
T  2572156 acggacacggacactggacacgacacggataccgacacgtcgacacacctaataatttgaaaaaatcacataa 2572084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 11944620 - 11944696
Alignment:
Q  213 aagcacggatacggacaccggacacgacacggaa-ctaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||| ||||||||||||  ||||||||||||  |||||||| |||||| ||||||||||||| ||||||||||||    
T  11944620 aagcacagatacggacaccaaacacgacacggatgctaacacgccgacactgttaataatttgataaaatcacataa 11944696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 13437068 - 13436992
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||| | |||||||||||| |||| ||| ||| ||||| |||||||| ||||||||||||||||||||||||    
T  13437068 aagcacggacatggacaccggacatgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataa 13436992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 41838227 - 41838151
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||||   ||||||| ||||| ||| |||||||||||||| ||||||||| ||||||||||||||    
T  41838227 aagcacggatacggacataagacacgatacggacactgacacgtcgacacagctaataatttaaaaaaatcacataa 41838151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 4673525 - 4673458
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatca 283  Q
    ||||||||||||| |||||||||||| || ||| ||||| |||||||| |||||||||||||||||||    
T  4673525 acggatacggacatcggacacgacacagacactgacacgccgacacagataataatttgaaaaaatca 4673458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 22197836 - 22197770
Alignment:
Q  223 acggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||||||| || ||||||||| | |||||| ||||||||||||||| ||||||||    
T  22197836 acggacaccggacacgacacagacactaacacgccaacacagctaataatttgaaaaattcacataa 22197770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 11927190 - 11927114
Alignment:
Q  213 aagcacggatacggacaccggacacgacacggaa-ctaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||| ||||||||||||  ||||||||||||  |||| ||| |||||| ||||||||||||| ||||||||||||    
T  11927190 aagcacagatacggacaccaaacacgacacggatgctaatacgccgacactgttaataatttgataaaatcacataa 11927114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 25192451 - 25192375
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||| ||||||||| ||||||||| ||||| ||| ||||| |||||||| ||||||||||||||| | ||||||    
T  25192451 aagcacgaatacggacatcggacacgatacggacactgacacgccgacacagctaataatttgaaaaagtgacataa 25192375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 28642363 - 28642439
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||||||||||| ||||||||||||||| | | |||| | ||||| ||||||||||||||||| | ||||||    
T  28642363 aagcacggatacggacatcggacacgacacggacaatgacacattgacacggttaataatttgaaaaatttacataa 28642439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 31556956 - 31557027
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||||||| |||| ||  ||| ||||| ||||||||||||||||||| |||||||||||||    
T  31556956 acggatacggacaccggacatgacatggtcactgacacgccgacacagttaataatttg-aaaaatcacataa 31557027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 36934629 - 36934701
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||  |||||  |||||||||||| |||||||||||||||| | |||||||| |||||||||||||||    
T  36934629 acggatacaaacaccaaacacgacacggacactaacacgtcgacaccgctaataattcgaaaaaatcacataa 36934701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 288
Target Start/End: Original strand, 20873042 - 20873100
Alignment:
Q  231 cggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||||||||| ||| ||||| ||||| || ||||||||||||||||||||||||    
T  20873042 cggacacgacacggacactgacacgccgacatagataataatttgaaaaaatcacataa 20873100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 949328 - 949292
Alignment:
Q  252 acgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||||||||||||||||||| ||||    
T  949328 acgtcgacacagttaataatttgaaaaaatcaaataa 949292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 3677761 - 3677817
Alignment:
Q  233 gacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||||||| ||| |||| |||||||| |||||||||| ||||||||||||||    
T  3677761 gacacgacacggatactgacacatcgacacaattaataattttaaaaaatcacataa 3677817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 280
Target Start/End: Original strand, 24857968 - 24858032
Alignment:
Q  217 acggatacggacaccggacacgacacggaacta-acacgtcgacacagttaataatttgaaaaaa 280  Q
    ||||| ||| |||||||||||||||||||  |  ||||| |||||||||||||||||||||||||    
T  24857968 acggacacgaacaccggacacgacacggacatggacacgccgacacagttaataatttgaaaaaa 24858032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 40332160 - 40332192
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga 245  Q
    |||||||||||||||||||||||||||||||||    
T  40332160 aagcacggatacggacaccggacacgacacgga 40332192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 41832000 - 41831968
Alignment:
Q  256 cgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||||||||||||||||||||    
T  41832000 cgacacagttaataatttgaaaaaatcacataa 41831968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 18170576 - 18170510
Alignment:
Q  223 acggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| ||||| ||||||||||| ||| ||||| ||||||| |||| ||||||||||||| ||||||    
T  18170576 acggataccggtcacgacacggacactgacacgccgacacaattaaaaatttgaaaaaattacataa 18170510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 18634144 - 18634078
Alignment:
Q  223 acggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| ||||| ||||||||||| ||| ||||| ||||||| |||| ||||||||||||| ||||||    
T  18634144 acggataccggtcacgacacggacactgacacgccgacacaattaaaaatttgaaaaaattacataa 18634078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 24362302 - 24362230
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||||| ||||||| || ||  ||||| |||||| | ||||||||||| | ||||||||||    
T  24362302 acggatacggacaccggatacgacacagacaccgacacgccgacaccgctaataatttgagagaatcacataa 24362230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 285
Target Start/End: Complemental strand, 9107464 - 9107401
Alignment:
Q  223 acggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcaca 285  Q
    ||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||    
T  9107464 acggacaccggacacgacacggacactaacacgccgacacagctaataatttgaaaaaatcaca 9107401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 426608 - 426542
Alignment:
Q  223 acggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| ||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||    
T  426608 acggataccggacacgacacggacactgacacgccgacacagttaataatttgaaaaaatcacataa 426542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 288
Target Start/End: Complemental strand, 853960 - 853887
Alignment:
Q  216 cacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||||||||||||||||||||||||  || ||||| |||||||  ||||||||||||||||||||||||    
T  853960 cacggatacggacaccggacacgacacggatgctgacacgccgacacaactaataatttgaaaaaatcacataa 853887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 288
Target Start/End: Complemental strand, 8365631 - 8365547
Alignment:
Q  204 tacctatgaaagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||| ||||||||||||||||| ||||||||||||| ||| ||||| |||||||  |||||||||||||| |||||||||    
T  8365631 tacctatgaa-gcacggatacggacaccagacacgacacggacactgacacgccgacacaactaataatttgaaaatatcacataa 8365547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 12696280 - 12696355
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||||| |||||||||||||| ||| ||||| |||||||| ||||||||||||||||| ||||||    
T  12696280 aagcacggatacggacac-ggacacgacacggacactgacacgccgacacagctaataatttgaaaaaattacataa 12696355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 16766656 - 16766728
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| ||||||||||||||||||| ||| ||| ||||| |||||||| ||||||||||||||||||||||||    
T  16766656 acggacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataa 16766728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 5970202 - 5970136
Alignment:
Q  217 acggatacggacaccggacacgacacggaactaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| |||||||||||||| ||||||||     ||||||||||||||||||||||||||||||||||||||    
T  5970202 acggacacggacaccggacatgacacgga-----cacgtcgacacagttaataatttgaaaaaatcacataa 5970136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 4118433 - 4118361
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| ||||||||||||||||||||| | | ||||||| ||| | |||||||||||||||||||||||||||    
T  4118433 acggacacggacaccggacacgacacgtatattaacacgacgatatagttaataatttgaaaaaatcacataa 4118361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 7938075 - 7938147
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| ||||||||||||||||||| ||| ||| ||||| |||||||| ||||||||||||||||||| ||||    
T  7938075 acggacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcatataa 7938147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 34595099 - 34595165
Alignment:
Q  223 acggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||||||||||||||||| | | ||||| |||||||  ||||||||||||||||||||||||    
T  34595099 acggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaatcacataa 34595165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 8777073 - 8777004
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcaca 285  Q
    ||||| ||||||| ||||||||||||||| ||| ||||| |||||||  |||||||||||||||||||||    
T  8777073 acggacacggacaacggacacgacacggacactgacacgccgacacaactaataatttgaaaaaatcaca 8777004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 31959115 - 31959190
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||||| ||||| |||||| | ||| ||||| || ||||| ||||||||||||||||||||||||    
T  31959115 aagcacggatacggacac-ggacatgacacgaacactgacacgccgtcacagctaataatttgaaaaaatcacataa 31959190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 3398574 - 3398641
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaa 279  Q
    ||||| ||||||||||| || |||||||||||| ||| ||||| |||||||| |||||||||||||||    
T  3398574 aagcatggatacggacatcgaacacgacacggacactgacacgccgacacagctaataatttgaaaaa 3398641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 3209347 - 3209413
Alignment:
Q  223 acggacaccggacacgacacggaactaacacgtcgacacagttaataatttg-aaaaaatcacataa 288  Q
    |||||||||||||||||||||  ||  ||||| |||||||| |||||||||| ||||||||||||||    
T  3209347 acggacaccggacacgacacgacacagacacgccgacacagctaataatttgaaaaaaatcacataa 3209413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 7977924 - 7977858
Alignment:
Q  223 acggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||| |||||||||| ||| ||| ||||| |||||||| ||||||||||||||||| ||||||    
T  7977924 acggacactggacacgacatggatactgacacgccgacacagctaataatttgaaaaaattacataa 7977858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 5732604 - 5732539
Alignment:
Q  223 acggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacata 287  Q
    |||||||| |||||||||| ||| ||| ||||| |||||| ||||||||||||| |||||||||||    
T  5732604 acggacactggacacgacatggacactgacacgccgacaccgttaataatttgagaaaatcacata 5732539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 281
Target Start/End: Original strand, 6389698 - 6389767
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaat 281  Q
    ||||||||| || |||||||||||||||||||| ||| ||||| |||||| | ||||||||||| |||||    
T  6389698 aagcacggacacagacaccggacacgacacggacactcacacgccgacacggataataatttgagaaaat 6389767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 12868762 - 12868706
Alignment:
Q  224 cggacaccggacacgacacggaactaacacgtcgacacagttaataatttgaaaaaatcaca 285  Q
    ||||||||||||||||||| ||     |||| ||||||||||||||||||||||||||||||    
T  12868762 cggacaccggacacgacactga-----cacgccgacacagttaataatttgaaaaaatcaca 12868706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 286
Target Start/End: Complemental strand, 5000720 - 5000656
Alignment:
Q  223 acggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacat 286  Q
    |||||||||||||| |||||||| ||| |||||||||||| | |||||||| || ||||||||||    
T  5000720 acggacaccggacatgacacggatactgacacgtcgacaccgctaataattcgagaaaatcacat 5000656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 7930260 - 7930336
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| |||||| ||||||||||||   ||||| ||| ||| | ||||||| |||||||||||||||||||||||||    
T  7930260 aagcatggatacagacaccggacacagaacggacactgacatgccgacacaattaataatttgaaaaaatcacataa 7930336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 8713944 - 8714011
Alignment:
Q  217 acggatacggacaccggacacgacacggaactaacacgtcgacacagttaataatttg-aaaaaatcacataa 288  Q
    ||||| |||||||||||||| |||| ||     ||||||||||||||||||||||||| ||||||||||||||    
T  8713944 acggacacggacaccggacatgacatgg-----acacgtcgacacagttaataatttgaaaaaaatcacataa 8714011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 9027137 - 9027209
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| |||||| |||||||||||||||| ||| ||||| |||||| | ||||||||||| | ||||||||||    
T  9027137 acggacacggactccggacacgacacggacactgacacgccgacaccgctaataatttgagataatcacataa 9027209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 17841668 - 17841617
Alignment:
Q  238 gacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||| ||| ||||| |||||||| ||||||||||||||||||||||||    
T  17841668 gacacggacactgacacgccgacacagctaataatttgaaaaaatcacataa 17841617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 7801226 - 7801184
Alignment:
Q  246 actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||| |||||||  ||||||||||||||||||||||||    
T  7801226 actaacacgccgacacaactaataatttgaaaaaatcacataa 7801184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 15489816 - 15489767
Alignment:
Q  233 gacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaat 281  Q
    ||||| ||||||| |||||||||||||||||  |||||||||||||||||    
T  15489816 gacacaacacggacactaacacgtcgacacaactaataatttgaaaaaat 15489767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 16833281 - 16833338
Alignment:
Q  231 cggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacata 287  Q
    |||||||||||| || ||| ||||| |||||||  |||||||||||||||||||||||    
T  16833281 cggacacgacacagacactgacacgccgacacaactaataatttgaaaaaatcacata 16833338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 9658835 - 9658910
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||| ||||| | |||||||||||| ||| ||||| |||||| | ||||||||| | ||||||||||||    
T  9658835 aagcacggatacagacacag-acacgacacggacactgacacgccgacaccgctaataatttaagaaaatcacataa 9658910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 17341767 - 17341692
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||| || |||||| | ||||||||||  ||| ||||| |||||| ||||||||||||| ||||||||||||    
T  17341767 aagcacggacacagacacctg-cacgacacgggcactgacacgccgacaccgttaataatttgataaaatcacataa 17341692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 25010262 - 25010230
Alignment:
Q  256 cgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||| ||||||||||||||||||||||||    
T  25010262 cgacacagctaataatttgaaaaaatcacataa 25010230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 25038175 - 25038099
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||||  | | ||||||| || ||| |||||| ||||| ||||||||||||| ||||| ||||||    
T  25038175 aagcacggatacggacattgaatacgacacagatactgacacgttgacaccgttaataatttgagaaaattacataa 25038099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 288
Target Start/End: Original strand, 15323117 - 15323194
Alignment:
Q  212 aaagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||| ||| ||||||||||||||||||| ||| ||| ||| ||||| |||||||||||||||||||||||||||||    
T  15323117 aaagcatggacacggacaccggacacgacatggacactgacatgtcgatacagttaataatttgaaaaaatcacataa 15323194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 40917716 - 40917779
Alignment:
Q  223 acggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcaca 285  Q
    ||||||||||||||||||||||| ||| ||||| |||||||| |||||||||||||||||||||    
T  40917716 acggacaccggacacgacacggatactgacacgccgacacagctaataatttgaaaaaatcaca 40917779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 398858 - 398793
Alignment:
Q  224 cggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||||||||| ||| ||||| |||||| | ||||||||||||||||||||||||    
T  398858 cggacaccggacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatcacataa 398793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 48040560 - 48040499
Alignment:
Q  219 ggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaa 279  Q
    ||||||||||||||||||||||||||| ||| ||||| |||||||| |||||||||||||||    
T  48040560 ggatacggacaccggacacgacacggacactgacacgccgacacagataataatttgaaaaa 48040499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 5927444 - 5927368
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||||||||||||||||||||||||||| ||| |||||   |||| | ||||||||||||||||||| ||||    
T  5927444 aagcacggatacggacaccggacacgacacggacactgacacgctaacactgctaataatttgaaaaaatcatataa 5927368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 38078766 - 38078689
Alignment:
Q  213 aagcacggatacggacaccggacac--gacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||||| ||||||  |||||| | ||| |||||||||||||| ||||||||||||||||||||||||    
T  38078766 aagcacggatacggacac-ggacaccggacacgaacactgacacgtcgacacagctaataatttgaaaaaatcacataa 38078689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 1486809 - 1486737
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| ||||| |||||| |||||||||| ||| |||||  ||||||| ||||||||||||||||||||||||    
T  1486809 acggacacggataccggatacgacacggatactgacacgctgacacagctaataatttgaaaaaatcacataa 1486737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 6612271 - 6612199
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| ||| ||||||||||||||||||| | | ||||| ||| |||||||||||||||||||||| ||||||    
T  6612271 acggacacgaacaccggacacgacacggacaatgacacgccgatacagttaataatttgaaaaaattacataa 6612199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 9103633 - 9103671
Alignment:
Q  250 acacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  9103633 acacgccgacacagttaataatttgaaaaaatcacataa 9103671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 288
Target Start/End: Complemental strand, 10572690 - 10572617
Alignment:
Q  216 cacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||||||||||||| | | ||| ||||| ||||||   ||||||||||| ||||||||||||    
T  10572690 cacggatacggacaccggacacgacatgaacactgacacgccgacaccactaataatttgagaaaatcacataa 10572617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 1262848 - 1262915
Alignment:
Q  222 tacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||| ||||||||||||||| | ||  ||||| |||||||| ||||||||||| ||||||||||||    
T  1262848 tacggataccggacacgacacgaacacggacacgccgacacagctaataatttgagaaaatcacataa 1262915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 31694810 - 31694748
Alignment:
Q  217 acggatacggacaccggacacgacacggaactaacacgtcgacacagttaataatttgaaaaaa 280  Q
    ||||||||||||||||||||||||| |  ||| | ||||||||| || ||||||||||||||||    
T  31694810 acggatacggacaccggacacgaca-gacactgatacgtcgacatagctaataatttgaaaaaa 31694748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 113292 - 113330
Alignment:
Q  250 acacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  113292 acacgccgacacagctaataatttgaaaaaatcacataa 113330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 2896215 - 2896149
Alignment:
Q  223 acggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||| ||||||| ||||||| ||| ||||| |||||| | ||||||||||| ||||||||||||    
T  2896215 acggacaacggacacaacacggacactgacacgccgacaccgctaataatttgagaaaatcacataa 2896149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 48450673 - 48450615
Alignment:
Q  231 cggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||||||||| ||| ||||| | |||||| ||||||||||||||||| ||||||    
T  48450673 cggacacgacacggacactgacacgccaacacagctaataatttgaaaaaataacataa 48450615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 16297375 - 16297314
Alignment:
Q  225 ggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcaca 285  Q
    ||||| ||||||||| ||||| ||| ||||||||||||||  |||||| |||||||||||||    
T  16297375 ggacatcggacacgatacggatactgacacgtcgacacagcaaataatatgaaaaaatcaca 16297314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 22881704 - 22881644
Alignment:
Q  223 acggacaccggacacgacacggaactaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||||||| ||     |||| |||||||  ||||||||||||||||||||||||    
T  22881704 acggacaccggacacgacactga-----cacgccgacacaactaataatttgaaaaaatcacataa 22881644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 242
Target Start/End: Complemental strand, 35702686 - 35702657
Alignment:
Q  213 aagcacggatacggacaccggacacgacac 242  Q
    ||||||||||||||||||||||||||||||    
T  35702686 aagcacggatacggacaccggacacgacac 35702657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 1864940 - 1864908
Alignment:
Q  256 cgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||||||| ||||||||||||    
T  1864940 cgacacagttaataatttgagaaaatcacataa 1864908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 23738677 - 23738709
Alignment:
Q  256 cgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||| ||||||||||||||||||||||||    
T  23738677 cgacacagctaataatttgaaaaaatcacataa 23738709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 30749797 - 30749829
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga 245  Q
    ||||| |||||||||||||||||||||||||||    
T  30749797 aagcatggatacggacaccggacacgacacgga 30749829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 30771248 - 30771280
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga 245  Q
    ||||| |||||||||||||||||||||||||||    
T  30771248 aagcatggatacggacaccggacacgacacgga 30771280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 31014998 - 31015074
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||| || |||||||| ||||||||||  ||| || || | |||||| ||||||||||| ||||||||||||    
T  31014998 aagcacggacacagacaccgggcacgacacgggcactgacgcgcctacacagctaataatttgagaaaatcacataa 31015074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 241
Target Start/End: Complemental strand, 39130871 - 39130843
Alignment:
Q  213 aagcacggatacggacaccggacacgaca 241  Q
    |||||||||||||||||||||||||||||    
T  39130871 aagcacggatacggacaccggacacgaca 39130843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 40258993 - 40258961
Alignment:
Q  256 cgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||| |||||||||||||||||||||||||    
T  40258993 cgacacaattaataatttgaaaaaatcacataa 40258961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 46641 - 46713
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| ||||||| ||||||||||||||| | | ||||| |||||||||||||||||||||||||||||||||    
T  46641 acggacacggacatcggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaatcacataa 46713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 24339601 - 24339673
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||||||||||||||||||| ||| | | ||||| |||||||| ||||||||||||||||||||||||    
T  24339601 acggatacggacaccggacacgacatggacattgacacgccgacacagctaataatttgaaaaaatcacataa 24339673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 43027573 - 43027497
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||| ||||||| |||||||||||||| ||| ||||| |||| ||| ||||||||||||||||||||||||    
T  43027573 aagcacggatgcggacactggacacgacacggacactgacacggcgacccagctaataatttgaaaaaatcacataa 43027497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 26733263 - 26733335
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||| |||||| ||||||||||||| ||| |||||||||||| | ||||||||||| ||||||||||||    
T  26733263 acggataccgacaccagacacgacacggacactgacacgtcgacaccgctaataatttgacaaaatcacataa 26733335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 27944996 - 27945072
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| ||||||   ||||||||||| ||||| ||||||    
T  27944996 aagcacggatacggacaccggacacgacacggacactgacacgccgacaccactaataatttgagaaaattacataa 27945072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 281
Target Start/End: Original strand, 24105634 - 24105702
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaat 281  Q
    ||||||||||||||| || |||||||||||||| ||| ||||| |||||||| |||||||||||||||||    
T  24105634 aagcacggatacggatac-ggacacgacacggacactgacacgccgacacagctaataatttgaaaaaat 24105702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 7328795 - 7328719
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||||||| ||||||||| || | ||||||||||| || | ||||||||||| ||||| ||||||    
T  7328795 aagcacggatacggacaccgaacacgacacagacattaacacgtcgatactgctaataatttgagaaaataacataa 7328719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 11061176 - 11061104
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| ||||||| |||| |||||||||| ||| ||||  |||||||| ||||||||||||||||||||||||    
T  11061176 acggacacggacatcggatacgacacggacactgacacaccgacacagctaataatttgaaaaaatcacataa 11061104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 286
Target Start/End: Original strand, 1433419 - 1433483
Alignment:
Q  223 acggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacat 286  Q
    |||||||||| |||||||||||| | | ||||| |||||| ||||||||||||| ||||||||||    
T  1433419 acggacaccgaacacgacacggacattgacacgccgacaccgttaataatttgagaaaatcacat 1433483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 7438705 - 7438737
Alignment:
Q  256 cgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||||||||||||||||||||    
T  7438705 cgacacagttaataatttgaaaaaatcacataa 7438737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 18215265 - 18215214
Alignment:
Q  238 gacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||| ||||||||| |||| ||| ||||||||||||||||||||||||    
T  18215265 gacacggacactaacacgccgacgcagctaataatttgaaaaaatcacataa 18215214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 11722192 - 11722126
Alignment:
Q  223 acggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| ||||||||||||||||| ||| ||||| |||||| | ||| ||||||| ||||||||||||    
T  11722192 acggataccggacacgacacggacactgacacgccgacaccgctaacaatttgagaaaatcacataa 11722126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 19206015 - 19206081
Alignment:
Q  223 acggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| ||| ||||||||||||| || |||||| |||||| | ||||||||||| ||||||||||||    
T  19206015 acggataccagacacgacacggacaccaacacgccgacaccgctaataatttgagaaaatcacataa 19206081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 25481895 - 25481933
Alignment:
Q  250 acacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  25481895 acacgccgacacagctaataatttgaaaaaatcacataa 25481933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 35861953 - 35861995
Alignment:
Q  246 actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||| |||||||  ||||||||||||||||||||||||    
T  35861953 actaacacgccgacacaactaataatttgaaaaaatcacataa 35861995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 43249958 - 43250024
Alignment:
Q  223 acggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||| |||||||| ||| ||||| |||||| | ||||||||||| ||||| ||||||    
T  43249958 acggacaccggacaagacacggacactgacacgccgacacggataataatttgagaaaatgacataa 43250024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 2425830 - 2425761
Alignment:
Q  220 gatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| ||||| ||||||||||| || ||| ||||| || ||| ||||||||||||| ||||||||||||    
T  2425830 gatacagacactggacacgacacagatactgacacgccggcaccgttaataatttgagaaaatcacataa 2425761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 13770657 - 13770722
Alignment:
Q  224 cggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||| ||||||||||||||| ||| | ||| |||||||| ||||||||| ||||||| ||||||    
T  13770657 cggacatcggacacgacacggacactgatacgccgacacagctaataatttaaaaaaattacataa 13770722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 9408394 - 9408362
Alignment:
Q  256 cgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||| |||||||||||||||||||||||||    
T  9408394 cgacacaattaataatttgaaaaaatcacataa 9408362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 23293086 - 23293014
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| ||||||||||||||||||||||| | | ||||| |||||||| ||||||||||||||||||||||||    
T  23293086 acggacacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataa 23293014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 11651238 - 11651162
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||||   ||||||| ||||| ||| |||||||||||||| ||||||||| ||||||||||||||    
T  11651238 aagcacggatacggacataagacacgatacggacactgacacgtcgacacagctaataatttaaaaaaatcacataa 11651162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 27706277 - 27706205
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| ||||||||| ||||||||| ||| ||| ||||||||||||| |||||||||| ||||||||||||||    
T  27706277 acggacacggacaccagacacgacagggacactgacacgtcgacacaattaataatttaaaaaaatcacataa 27706205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 12895374 - 12895302
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||||| |||||||| | | | ||||| |||||||  ||||||||||||||||||||||||    
T  12895374 acggatacggacaccggatacgacacgaacaatgacacgccgacacaaataataatttgaaaaaatcacataa 12895302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 28084476 - 28084553
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttg-aaaaaatcacataa 288  Q
    |||||| ||||||||||||||||||||||| ||  || ||||| |||||||| ||| |||||| ||||||||||||||    
T  28084476 aagcacagatacggacaccggacacgacacagacgctgacacgccgacacagctaagaatttgaaaaaaatcacataa 28084553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 12628688 - 12628617
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcac 284  Q
    ||||||||||||||| || ||||| ||||| || ||| ||| | |||||||||||||||||||||||||||||    
T  12628688 aagcacggatacggatac-ggacatgacactgacactgacatgccgacacagttaataatttgaaaaaatcac 12628617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 280
Target Start/End: Original strand, 20633444 - 20633508
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaa 280  Q
    ||||| ||||||||| ||||||| ||||| ||| |||||||||||| | ||||||||||||||||    
T  20633444 acggacacggacaccagacacgatacggacactgacacgtcgacaccgctaataatttgaaaaaa 20633508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 35158085 - 35158013
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| ||||||||||||||| ||||||| ||| ||||| |||| ||  |||||||||| |||||||||||||    
T  35158085 acggacacggacaccggacacaacacggacactgacacgccgacgcaactaataatttggaaaaatcacataa 35158013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 7251725 - 7251663
Alignment:
Q  213 aagcacggatacggacaccggacacgacacggaactaacacgtcgacacagttaataatttgaaaaaa 280  Q
    ||||||||||||||||||||||||| |||| |||     ||| |||||||| ||||||||||||||||    
T  7251725 aagcacggatacggacaccggacacaacacagaa-----acgccgacacagctaataatttgaaaaaa 7251663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 21945468 - 21945534
Alignment:
Q  223 acggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||| ||||| || ||| ||| | |||||||| ||||||||||||||||| ||||||    
T  21945468 acggacaccggacatgacacagacactgacatgccgacacagctaataatttgaaaaaatgacataa 21945534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 242
Target Start/End: Complemental strand, 482335 - 482306
Alignment:
Q  213 aagcacggatacggacaccggacacgacac 242  Q
    ||||||||||||||||||||||||||||||    
T  482335 aagcacggatacggacaccggacacgacac 482306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 14126196 - 14126139
Alignment:
Q  232 ggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||||| || ||||||||| |||||| ||||||||||||| ||| ||||||||    
T  14126196 ggacacgacacagacactaacacgccgacactgttaataatttgataaagtcacataa 14126139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 20521941 - 20521877
Alignment:
Q  225 ggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||| ||||||||||||| ||| ||||| ||| || | ||||||||||| ||||||||||||    
T  20521941 ggacaccagacacgacacggacactgacacgccgataccgataataatttgataaaatcacataa 20521877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 217 - 283
Target Start/End: Original strand, 8757 - 8824
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatca 283  Q
    ||||| ||||||||||||||||||||||| ||| ||||| |||||||| |||||||||||||||||||    
T  8757 acggacacggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatca 8824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 241559 - 241625
Alignment:
Q  223 acggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||||||||||||||||| ||| ||||| |||||||| |||||||||| |||||||||||||    
T  241559 acggacaccggacacgacacggacactgacacgccgacacagctaataatttggaaaaatcacataa 241625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 3164119 - 3164053
Alignment:
Q  223 acggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||||||||||||||||| | |  ||||||||||||| ||||||||||||||||||||||||    
T  3164119 acggacaccggacacgacacggacaatggcacgtcgacacagctaataatttgaaaaaatcacataa 3164053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 15796388 - 15796322
Alignment:
Q  223 acggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||| ||||    
T  15796388 acggacaccggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaatcatataa 15796322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 28917966 - 28918032
Alignment:
Q  223 acggacaccggacacgacacggaa-ctaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||||||||||| || ||||| ||||| || ||||||||||||||||||||||||    
T  28917966 acggacaccggacacgacacggaaactgacacgccgacatagctaataatttgaaaaaatcacataa 28918032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 8587125 - 8587049
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||| ||||||||||||||||| |||||||| ||| ||||| |||||||  || |||||||||||||||||||||    
T  8587125 aagcacagatacggacaccggacatgacacggacactgacacgccgacacatctagtaatttgaaaaaatcacataa 8587049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 55401030 - 55401106
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||| ||||||||||||||| |||||||||| ||| | ||| |||||||  ||||||||||||||||||||||||    
T  55401030 aagcacagatacggacaccggatacgacacggacactgatacgccgacacaactaataatttgaaaaaatcacataa 55401106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 10335380 - 10335315
Alignment:
Q  223 acggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacata 287  Q
    ||||||||||||||||||||||| ||| ||||| |||||||  ||||||||||||||| |||||||    
T  10335380 acggacaccggacacgacacggacactgacacgccgacacaactaataatttgaaaaagtcacata 10335315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 10268552 - 10268514
Alignment:
Q  250 acacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  10268552 acacgccgacacagttaataatttgaaaaaatcacataa 10268514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 24205135 - 24205069
Alignment:
Q  223 acggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||||||||||||||||| ||| ||||| |||||| | ||||||||||| ||||| ||||||    
T  24205135 acggacaccggacacgacacggacactgacacgccgacacggataataatttgagaaaatgacataa 24205069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 750719 - 750646
Alignment:
Q  217 acggatacggacaccggacacgacacgga-ac-taacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| ||||||||||||||||||||||| || | ||||| |||||||  |||||||||||||| |||||||||    
T  750719 acggacacggacaccggacacgacacggacacttgacacggcgacacaactaataatttgaaaatatcacataa 750646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 14747526 - 14747593
Alignment:
Q  217 acggatacggacaccggacacgacacggaactaacacgtcgacacagttaataatttg-aaaaaatcacataa 288  Q
    |||||||||||||||||||||||||| ||     |||| |||||||| |||||||||| ||||||||||||||    
T  14747526 acggatacggacaccggacacgacactga-----cacgccgacacagctaataatttgaaaaaaatcacataa 14747593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 21479083 - 21479146
Alignment:
Q  217 acggatacggacaccggacacgacacggaactaacacgtcgacacagttaataatttgaaaaaatcaca 285  Q
    ||||| |||||||||||||||||||| ||     |||| |||||||| |||||||||||||||||||||    
T  21479083 acggacacggacaccggacacgacactga-----cacgccgacacagctaataatttgaaaaaatcaca 21479146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 285
Target Start/End: Original strand, 25093470 - 25093530
Alignment:
Q  226 gacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcaca 285  Q
    ||||||||||||||||| || ||||||||| |||||| |||||| |||||| |||||||||    
T  25093470 gacaccggacacgacactgacactaacacgccgacactgttaatgatttgagaaaatcaca 25093530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 8383213 - 8383288
Alignment:
Q  214 agcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||| |||||||| |||||||||||||| | | ||||| |||||| | ||||||||||| ||||||| ||||    
T  8383213 agcacggacacggacactggacacgacacggacattgacacgccgacaccgctaataatttgagaaaatcatataa 8383288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 3610602 - 3610664
Alignment:
Q  227 acaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||| || ||| ||||| | |||||||||||||||| ||||||| ||||||    
T  3610602 acaccggacacgacacagacactgacacgccaacacagttaataatttaaaaaaataacataa 3610664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 4987357 - 4987319
Alignment:
Q  250 acacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  4987357 acacgccgacacagctaataatttgaaaaaatcacataa 4987319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 288
Target Start/End: Original strand, 25064859 - 25064940
Alignment:
Q  207 ctatgaaagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||| ||||| ||| ||||||||||||||||| || | | ||||| |||||| | |||| |||||||||||||||||||    
T  25064859 ctatgaaa-cacgggtacagacaccggacacgacacagacattgacacgccgacaccgctaatgatttgaaaaaatcacataa 25064940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 40052325 - 40052363
Alignment:
Q  250 acacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  40052325 acacgccgacacagctaataatttgaaaaaatcacataa 40052363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 246
Target Start/End: Original strand, 8842285 - 8842318
Alignment:
Q  213 aagcacggatacggacaccggacacgacacggaa 246  Q
    |||||||||||||||||||||| |||||||||||    
T  8842285 aagcacggatacggacaccggatacgacacggaa 8842318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 288
Target Start/End: Original strand, 14979175 - 14979212
Alignment:
Q  251 cacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  14979175 cacgccgacacagctaataatttgaaaaaatcacataa 14979212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 26492291 - 26492238
Alignment:
Q  231 cggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatca 283  Q
    ||||||||||||||| ||| ||||| ||||| || |||||||||||||||||||    
T  26492291 cggacacgacacggacactgacacgccgacagagctaataatttgaaaaaatca 26492238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 14216848 - 14216923
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||| ||||||| | |||||||||||| ||| |||||||||||||  ||||||||| |||| |||| ||||    
T  14216848 aagcacggatgcggacacag-acacgacacggacactgacacgtcgacacaactaataattttaaaatatcatataa 14216923  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 14222977 - 14223052
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||| ||||||| | |||||||||||| ||| |||||||||||||  ||||||||| |||| |||| ||||    
T  14222977 aagcacggatgcggacacag-acacgacacggacactgacacgtcgacacaactaataattttaaaatatcatataa 14223052  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 14829657 - 14829720
Alignment:
Q  225 ggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||| ||||| || ||| ||||| |||||||| |||||||||| |||||||||||||    
T  14829657 ggacaccggacatgacacagacactgacacgccgacacagctaataatttg-aaaaatcacataa 14829720  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 286
Target Start/End: Complemental strand, 41961744 - 41961680
Alignment:
Q  223 acggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacat 286  Q
    |||||||||||||||||||| || ||| ||||| || ||||  |||||||||||||| |||||||    
T  41961744 acggacaccggacacgacacagacactgacacgccgtcacaactaataatttgaaaatatcacat 41961680  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 55212962 - 55212994
Alignment:
Q  256 cgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||||| ||||||||||||||    
T  55212962 cgacacagttaataattttaaaaaatcacataa 55212994  T

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Target: scaffold0306 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 13355 - 13431
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||||||||| | |||||||| ||| ||||| |||||||  ||||||||||| ||||||||||||    
T  13355 aagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatcacataa 13431  T

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Target: scaffold0152 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 21972 - 21896
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||||||||| | |||||||| ||| ||||| |||||||  ||||||||||| ||||||||||||    
T  21972 aagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatcacataa 21896  T

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Target: scaffold0021 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 130441 - 130513
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| ||||||||||||||||||||||| | | ||| | |||||||||||||| ||||||||||||||||||    
T  130441 acggacacggacaccggacacgacacggacaatgacaagccgacacagttaatagtttgaaaaaatcacataa 130513  T

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Target: scaffold0018 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 283
Target Start/End: Complemental strand, 178923 - 178852
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatca 283  Q
    |||||||||||  |||||||||||||||||||| ||| ||||| |||||||  |||||||||||||||||||    
T  178923 aagcacggatattgacaccggacacgacacggacactgacacgccgacacaactaataatttgaaaaaatca 178852  T

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Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 225362 - 225296
Alignment:
Q  223 acggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||||||||||||||||| ||| ||||| |||||||| ||||||||||| ||||| ||||||    
T  225362 acggacaccggacacgacacggacactgacacgccgacacagataataatttgagaaaatgacataa 225296  T

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Target: scaffold0171 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 23376 - 23451
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||||| ||||||||||| || ||| ||||| |||||||| |||||| |  ||||||||||||||    
T  23376 aagcacggatacggacac-ggacacgacacagacactgacacgccgacacagataataactcaaaaaaatcacataa 23451  T

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Target: scaffold0103 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 238 - 288
Target Start/End: Original strand, 51791 - 51842
Alignment:
Q  238 gacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||| ||| ||||| |||||||| ||||||||||||||||||||||||    
T  51791 gacacggacactgacacgccgacacagctaataatttgaaaaaatcacataa 51842  T

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Target: scaffold0019 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 71684 - 71746
Alignment:
Q  213 aagcacggatacggacaccggacacgacacggaactaacacgtcgacacagttaataatttgaaaaaa 280  Q
    ||||||||||||||||| |||||||||||| ||     |||| |||||||| ||||||||||||||||    
T  71684 aagcacggatacggacatcggacacgacactga-----cacgccgacacagctaataatttgaaaaaa 71746  T

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Target: scaffold0168 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 21008 - 21074
Alignment:
Q  223 acggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||||||| ||||||||||||| ||| ||| |  ||||| ||||||||||||| ||||||||||||    
T  21008 acggacaccagacacgacacggacactgacatgctgacacggttaataatttgagaaaatcacataa 21074  T

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Target: scaffold0050 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 254 - 288
Target Start/End: Original strand, 70275 - 70309
Alignment:
Q  254 gtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||||||||||||||||||| ||||||    
T  70275 gtcgacacagttaataatttgaaaaaataacataa 70309  T

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Target: scaffold0652 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 562 - 493
Alignment:
Q  217 acggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcaca 285  Q
    ||||| |||||||||| ||||| |||||| ||| | ||| |||||| | |||||||||||||||||||||    
T  562 acggacacggacaccgaacacgccacggacactgatacgccgacactgctaataatttgaaaaaatcaca 493  T

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Target: scaffold0722 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 7096 - 7060
Alignment:
Q  252 acgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  7096 acgtcgacacagctaataatttgaaaaaattacataa 7060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 135416 - 135340
Alignment:
Q  213 aagcacggatacggacaccggacacgacacgga-actaacacgtcgacacagttaataatttgaaaaaatcacataa 288  Q
    ||||| |||||||||||||| | ||||||| || || |||||  |||||| | ||||||||||| ||||||||||||    
T  135416 aagcatggatacggacaccgaatacgacacagacaccaacacaccgacactgctaataatttgagaaaatcacataa 135340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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