View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_high_52 (Length: 276)
Name: NF10466_high_52
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_high_52 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 38751300 - 38751542
Alignment:
| Q |
18 |
cacagaagagctgttacaatctttatcatttggtaattgaggtgatgatgaatccaattcaacaagcttcaaaatagtagcactattgttgcttctttgt |
117 |
Q |
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| T |
38751300 |
cacagaagagctattacaatctttatcatttggtaattgaggtgatgatgaatccaattcaacaagcttcaaaatagtagcactattgttgcttctttgt |
38751399 |
T |
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| Q |
118 |
tcaaatggagaagcaggactcacatggttttgaatgaaatatataatatcattgtaaagattcttcatgtgactgagttctgataacagcatgaaattct |
217 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38751400 |
tcaaagggagaagcaggactcacatggttttgaatgaaatatataatatcattgtaaagattcttcatgtgactgagttctgataacagcatgaaattct |
38751499 |
T |
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| Q |
218 |
ttctccttaatctttgattatcctcagaaagtgctgttaagat |
260 |
Q |
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| T |
38751500 |
ttctccttaatctttgattatcctcagaaagtgctgttaagat |
38751542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 3021148 - 3020907
Alignment:
| Q |
19 |
acagaagagctgttacaatctttatcatttggtaattgaggtgatgatgaatccaattcaacaagcttcaaaatagtagcactattgttgcttctttgtt |
118 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
3021148 |
acagaagagctattacaatctttatcatttggtaattgaggtgatgatgaatccaattcaacaagcttcaaaatagaagcactattgttgcttctttatt |
3021049 |
T |
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| Q |
119 |
caaatggagaagcaggactcacatggttttgaatgaaatatataatatcattgtaaagattcttcatgtgactgagttctgataacagcatgaaattctt |
218 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3021048 |
caaagggagaagcaggactcacatggttttgaatgaaatatataatatcattgtaaagattcttcatgtgactgagttctgataacagcatgaaattctt |
3020949 |
T |
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| Q |
219 |
tctccttaatctttgattatcctcagaaagtgctgttaagat |
260 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||| |
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| T |
3020948 |
tctccttagtctttgattatcctcagagagtgctgttaagat |
3020907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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