View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10466_high_59 (Length: 251)

Name: NF10466_high_59
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10466_high_59
NF10466_high_59
[»] chr3 (27 HSPs)
chr3 (21-238)||(19414796-19415013)
chr3 (21-233)||(18165773-18165985)
chr3 (21-238)||(18873049-18873266)
chr3 (21-238)||(18147442-18147659)
chr3 (21-233)||(19464970-19465182)
chr3 (21-238)||(19437570-19437787)
chr3 (21-238)||(19376234-19376451)
chr3 (21-170)||(17942634-17942783)
chr3 (21-238)||(19334621-19334838)
chr3 (21-170)||(19381573-19381722)
chr3 (21-233)||(25463667-25463879)
chr3 (21-162)||(14895561-14895702)
chr3 (21-169)||(19354396-19354544)
chr3 (21-237)||(19400339-19400555)
chr3 (32-238)||(19393761-19393967)
chr3 (21-238)||(18016634-18016851)
chr3 (21-170)||(18116645-18116794)
chr3 (21-237)||(17950445-17950661)
chr3 (65-237)||(18109052-18109224)
chr3 (21-169)||(19352073-19352221)
chr3 (32-159)||(16677901-16678028)
chr3 (21-163)||(17726708-17726850)
chr3 (21-163)||(19027937-19028079)
chr3 (47-135)||(19439359-19439447)
chr3 (21-170)||(19461867-19462018)
chr3 (21-159)||(18104037-18104175)
chr3 (68-170)||(19425367-19425469)
[»] chr4 (2 HSPs)
chr4 (21-238)||(15536145-15536362)
chr4 (21-159)||(2709759-2709897)
[»] scaffold0648 (1 HSPs)
scaffold0648 (21-233)||(3275-3487)
[»] scaffold0640 (1 HSPs)
scaffold0640 (21-233)||(6020-6232)
[»] scaffold0274 (2 HSPs)
scaffold0274 (21-233)||(2744-2956)
scaffold0274 (29-170)||(21304-21444)
[»] chr6 (1 HSPs)
chr6 (21-169)||(13666121-13666269)
[»] chr8 (1 HSPs)
chr8 (59-231)||(8460164-8460336)


Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 19415013 - 19414796
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 120  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19415013 caaggtctaagtgaaacaaatcagagagattaaatagctgtggtggaatagtcccttcaaatcggttatctctcaatatgaccacttctaagttctgtga 19414914  T
Q  121 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19414913 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagcagtacaaaggaacttcaccagatagc 19414814  T
Q  221 ctattactccacaggttc 238  Q
    ||||||||||||||||||    
T  19414813 ctattactccacaggttc 19414796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 21 - 233
Target Start/End: Complemental strand, 18165985 - 18165773
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 120  Q
    ||||||||||||||||||||| ||||||||| |||| |||||| |||||||||||||||||| ||||| ||||||||||||| |||||||| || |||||    
T  18165985 caaggtctaagtgaaacaaattagagagattgaatatttgtggtggaatagtcccttcaaattggttagctctcaatatgaccacttctaacttttgtga 18165886  T
Q  121 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 220  Q
     ||||  ||||||||||||||| ||||||||||||||||||| ||||||| |   ||||| ||| || | ||||||| ||| | |||||||||| |||||    
T  18165885 aatcaaaattggtatggttccagaaaattcattttctcccaagttcatgatttccaattggttcaaatcggagaagtgcaatgaaacttcaccaaatagc 18165786  T
Q  221 ctattactccaca 233  Q
    |||||||||||||    
T  18165785 ctattactccaca 18165773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 18873049 - 18873266
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 120  Q
    ||||||| ||||||||||||| ||||||||||||||||||||| | |||| ||||||||||| ||||| ||||||||||||||||||||| ||| |||||    
T  18873049 caaggtccaagtgaaacaaattagagagattaaatagttgtggtgaaatattcccttcaaattggttagctctcaatatgactacttctaggttttgtga 18873148  T
Q  121 catcatgattggtatggttccataaaattcattttctcccaaattcatgactct-taattgcttccaaccagagaagtacaaaggaacttcaccagatag 219  Q
    |||||||| ||||||| ||||| |||||||||||||||||||||||| || |||  || || |||||  |||||| ||      ||||||||||||||||    
T  18873149 catcatgaatggtatgtttccagaaaattcattttctcccaaattcaaga-tctgcaactgtttccattcagagaggtgatcttgaacttcaccagatag 18873247  T
Q  220 cctattactccacaggttc 238  Q
    |||||||||||||||||||    
T  18873248 cctattactccacaggttc 18873266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 18147659 - 18147442
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 120  Q
    ||||||||||||||| ||||| |||||| || ||||||||| | ||||||||||||||||||   ||| ||||||||||||| |||  |||||| |||||    
T  18147659 caaggtctaagtgaatcaaataagagaggttgaatagttgttgtggaatagtcccttcaaatttattagctctcaatatgaccactagtaagttttgtga 18147560  T
Q  121 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 220  Q
    |||||||||||||||||||||| |||||||||||||||| || ||||||| |   ||||| |||||   |||||||||||| |||| ||| ||||| | |    
T  18147559 catcatgattggtatggttccagaaaattcattttctcctaagttcatgatttccaattgtttccagtaagagaagtacaatggaagttccccagacaac 18147460  T
Q  221 ctattactccacaggttc 238  Q
    ||||||||||||||||||    
T  18147459 ctattactccacaggttc 18147442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 21 - 233
Target Start/End: Complemental strand, 19465182 - 19464970
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 120  Q
    ||||||||||||||||||||  |  ||||| |||||||||||| |||||||||||||||||| ||||| ||||||||||||| ||||||||||  |||||    
T  19465182 caaggtctaagtgaaacaaaatatggagatcaaatagttgtggtggaatagtcccttcaaattggttagctctcaatatgaccacttctaagtcttgtga 19465083  T
Q  121 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 220  Q
     |||| ||| |||||||||||| ||||||||||||| ||||| ||||||  |   ||||| ||| ||  |||||||| ||| | ||||||||||||||||    
T  19465082 aatcaagataggtatggttccagaaaattcattttcgcccaagttcatgttttccaattggttcaaattagagaagtgcaacgaaacttcaccagatagc 19464983  T
Q  221 ctattactccaca 233  Q
    |||||||||||||    
T  19464982 ctattactccaca 19464970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 19437787 - 19437570
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 120  Q
    ||||||||||||||| ||||| ||||||||| ||||||||| | ||||||||||||||||||   ||| ||||||||||||| |||| |||||| |||||    
T  19437787 caaggtctaagtgaatcaaataagagagattgaatagttgttgcggaatagtcccttcaaatttattagctctcaatatgaccacttttaagttttgtga 19437688  T
Q  121 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 220  Q
    |||||||||||||||||||||| |||||||||||||||| || ||||||  |   ||||| ||||    |||||||||||| |||| ||| || || | |    
T  19437687 catcatgattggtatggttccagaaaattcattttctcctaagttcatggtttccaattgtttccggttagagaagtacaatggaagttcccctgacaac 19437588  T
Q  221 ctattactccacaggttc 238  Q
    ||||||||||||||||||    
T  19437587 ctattactccacaggttc 19437570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 19376451 - 19376234
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 120  Q
    ||||||||||||||||||||| ||||||||| ||||||||| | ||||||||||||||||||   ||| ||||||||||||| |  | |||||| |||||    
T  19376451 caaggtctaagtgaaacaaataagagagattgaatagttgttgtggaatagtcccttcaaatttattagctctcaatatgaccaaatataagttttgtga 19376352  T
Q  121 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 220  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||| || |   ||||| ||  || |||||| ||      |||||||||||||||||    
T  19376351 catcttgattggtatggttccagaaaattcattttctcccaaattcaagaattgcaattgatttgaagcagagaggtgagctagaacttcaccagatagc 19376252  T
Q  221 ctattactccacaggttc 238  Q
    ||||||||||| ||||||    
T  19376251 ctattactccataggttc 19376234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 17942783 - 17942634
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 120  Q
    |||||||||||||||||||||  |||||||| ||||||||| | |||||||||||||||||| ||||| ||||||||||||| |||| |||||| |||||    
T  17942783 caaggtctaagtgaaacaaataggagagattgaatagttgttgcggaatagtcccttcaaattggttagctctcaatatgaccacttgtaagttttgtga 17942684  T
Q  121 catcatgattggtatggttccataaaattcattttctcccaaattcatga 170  Q
     |   ||||||||||||||||| |||| ||||||||||||||||||||||    
T  17942683 taagctgattggtatggttccaaaaaactcattttctcccaaattcatga 17942634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 19334838 - 19334621
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 120  Q
    |||||||||||| || ||||| ||||||||| ||||||||| | |||||||||||||||||| | ||  ||||||||||||  | || |||||| |||||    
T  19334838 caaggtctaagtaaatcaaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtga 19334739  T
Q  121 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 220  Q
    ||||    |||||||| ||||| |||||||||||||||||||||| |||||||| ||||| |||||| ||||||  | |    ||||||||||||| |||    
T  19334738 catccctgttggtatgcttccagaaaattcattttctcccaaatttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagc 19334639  T
Q  221 ctattactccacaggttc 238  Q
    ||||||||||| ||||||    
T  19334638 ctattactccataggttc 19334621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 19381722 - 19381573
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 120  Q
    ||||||||||||||||||||| ||||||||| |||| |||||| |||||| ||||||||||| ||||| ||||||||||||| | ||||||||| | |||    
T  19381722 caaggtctaagtgaaacaaataagagagattgaataattgtggtggaatattcccttcaaattggttagctctcaatatgacaatttctaagttttctga 19381623  T
Q  121 catcatgattggtatggttccataaaattcattttctcccaaattcatga 170  Q
     |   | ||||||||||||||| |||||||||||||||||||||||||||    
T  19381622 taagttcattggtatggttccagaaaattcattttctcccaaattcatga 19381573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 21 - 233
Target Start/End: Complemental strand, 25463879 - 25463667
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 120  Q
    ||||||| || |||||||||| || |||||| ||||||||||| |||||| ||||||||||| ||||  ||||||||||||| ||||||||||   |||     
T  25463879 caaggtccaaatgaaacaaataagtgagattgaatagttgtggtggaatattcccttcaaattggtttgctctcaatatgaccacttctaagtatagtgg 25463780  T
Q  121 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 220  Q
    |||  | ||||||||||||||| ||||||||||||||||||| ||||||| |   |||||  ||||| |||||| ||  |   |||||||||||||||||    
T  25463779 catgttcattggtatggttccagaaaattcattttctcccaagttcatgatttccaattgtctccaatcagagaggtgtactagaacttcaccagatagc 25463680  T
Q  221 ctattactccaca 233  Q
    |||||| ||||||    
T  25463679 ctattattccaca 25463667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 162
Target Start/End: Original strand, 14895561 - 14895702
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 120  Q
    ||||||| || |||||||||  || |||||| |||| |||||| |||||| ||||||||||| |||||  ||||||||| || |||| |||||  |||||    
T  14895561 caaggtccaaatgaaacaaagaagtgagattgaataattgtggtggaatattcccttcaaattggttagatctcaatataaccacttgtaagtattgtga 14895660  T
Q  121 catcatgattggtatggttccataaaattcattttctcccaa 162  Q
    ||||||| ||||||| ||||||||||||||||||||||||||    
T  14895661 catcatggttggtatagttccataaaattcattttctcccaa 14895702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 169
Target Start/End: Complemental strand, 19354544 - 19354396
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 120  Q
    ||||||||||||||||||||| ||||||||||||||||||| | || ||| ||||||||||| ||||  ||||||||||||| |||  ||||   |||||    
T  19354544 caaggtctaagtgaaacaaattagagagattaaatagttgttgtgggatattcccttcaaattggttggctctcaatatgaccactgttaaggattgtga 19354445  T
Q  121 catcatgattggtatggttccataaaattcattttctcccaaattcatg 169  Q
    |||  ||||||||||||||||| ||||||| ||  ||||||| ||||||    
T  19354444 cattttgattggtatggttccagaaaattcgttagctcccaagttcatg 19354396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 19400555 - 19400339
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 120  Q
    ||||||| || |||||||||| ||  ||||| |||| |||||  |||||||||||||||||| ||||| |||||| |||||| ||||||||||| |||||    
T  19400555 caaggtccaaatgaaacaaataagtaagattgaataattgtgttggaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtga 19400456  T
Q  121 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 220  Q
     |   ||||||||||||||||  |||||||||||||||||||  ||| ||||   |||||  ||||| |||||| ||      || ||||||||||||||    
T  19400455 aaagttgattggtatggttcccgaaaattcattttctcccaagatcaagacttccaattgtctccaatcagagaggtgtcccagagcttcaccagatagc 19400356  T
Q  221 ctattactccacaggtt 237  Q
    ||||||| |||||||||    
T  19400355 ctattacgccacaggtt 19400339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 238
Target Start/End: Complemental strand, 19393967 - 19393761
Alignment:
Q  32 tgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattg 131  Q
    ||||||| || ||||| ||| ||||||||| | |||||||| ||||||||| | ||  ||||||||||||| ||| ||||||| |||| ||||   | ||    
T  19393967 tgaaacatataagagatattgaatagttgttgtggaatagtaccttcaaattgattggctctcaatatgaccactactaagttttgtggcatcccaactg 19393868  T
Q  132 gtatggttccataaaattcattttctcccaaattcatgactct-taattgcttccaaccagagaagtacaaaggaacttcaccagatagcctattactcc 230  Q
    ||||| ||||| |||||||||||| |||||||||||||| |||  |||||  ||||| |||||| ||  || |||||||||||||| ||| |||||||||    
T  19393867 gtatgtttccagaaaattcattttttcccaaattcatga-tctgcaattgtctccaatcagagaggtttaatggaacttcaccagacagcttattactcc 19393769  T
Q  231 acaggttc 238  Q
    | ||||||    
T  19393768 ataggttc 19393761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 18016851 - 18016634
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 120  Q
    ||||||||||||||||||||| ||||||||| |||| |||| | |||||| |||||||||||   ||  ||||||||||||| |||  |||||| |||||    
T  18016851 caaggtctaagtgaaacaaataagagagattgaataattgtcgtggaataatcccttcaaatttattggctctcaatatgaccactcttaagttttgtga 18016752  T
Q  121 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 220  Q
    ||||   | ||||||| ||||| |||||||||||| |||||| |||||| |   |||||  |||||   ||||| ||| || |||| ||| ||||| |||    
T  18016751 catccctactggtatgtttccagaaaattcattttttcccaagttcatgtcctgtaattctttccagttagagatgtataatggaagttccccagacagc 18016652  T
Q  221 ctattactccacaggttc 238  Q
     ||||| |||||||||||    
T  18016651 ttattattccacaggttc 18016634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 18116794 - 18116645
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 120  Q
    ||||||| || |||||||||| || |||||| |||| |||||  |||||| ||||||||||| ||||| |||||| ||||||||||||||| |  ||||     
T  18116794 caaggtccaaatgaaacaaattagtgagattgaataattgtgttggaatactcccttcaaattggttacctctcagtatgactacttctaaatattgtgg 18116695  T
Q  121 catcatgattggtatggttccataaaattcattttctcccaaattcatga 170  Q
     ||  | | ||||||||||||| ||||||||||||||||||| |||||||    
T  18116694 tatgttcaatggtatggttccagaaaattcattttctcccaagttcatga 18116645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 17950661 - 17950445
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 120  Q
    ||||||| || |||||||| | ||  ||||| |||| |||||  |||||||| ||||| ||| ||||| ||||||||||||| |||||||| || |||||    
T  17950661 caaggtccaaatgaaacaagtaaggaagattgaataattgtgttggaatagttccttctaattggttagctctcaatatgacaacttctaatttttgtga 17950562  T
Q  121 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 220  Q
     |   |||||||||| ||| || ||||||||||||||||||| ||||||| |   |||||  ||||| |||||| ||      |||||||||||||||||    
T  17950561 taaattgattggtattgttgcagaaaattcattttctcccaagttcatgatttccaattgtctccaatcagagaggtgtcctagaacttcaccagatagc 17950462  T
Q  221 ctattactccacaggtt 237  Q
    ||||||||||| |||||    
T  17950461 ctattactccaaaggtt 17950445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 65 - 237
Target Start/End: Complemental strand, 18109224 - 18109052
Alignment:
Q  65 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaat 164  Q
    |||||||| ||||||||| ||||| ||||||||||||| |||||||| || ||||| |   |||||||||| ||| || ||||||||||||||||||| |    
T  18109224 ggaatagttccttcaaattggttagctctcaatatgacaacttctaatttttgtgataaattgattggtattgttgcagaaaattcattttctcccaagt 18109125  T
Q  165 tcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagcctattactccacaggtt 237  Q
    |||||| |   |||||  ||||| |||||| ||      |||||||||||||||||||||||||||| |||||    
T  18109124 tcatgatttccaattgtctccaatcagagaggtgtcctagaacttcaccagatagcctattactccaaaggtt 18109052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 169
Target Start/End: Complemental strand, 19352221 - 19352073
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 120  Q
    ||||||||||||||||||||| ||||||||| |||| |||| | |||||| |||||||||||   ||  |||| |||||||| ||| ||||||| |||||    
T  19352221 caaggtctaagtgaaacaaataagagagattgaataattgttgtggaataatcccttcaaatttattggctctaaatatgaccactactaagttttgtga 19352122  T
Q  121 catcatgattggtatggttccataaaattcattttctcccaaattcatg 169  Q
    ||||   |  |||||| ||||| ||||||||||||||||||| ||||||    
T  19352121 catccctaccggtatgtttccagaaaattcattttctcccaagttcatg 19352073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 159
Target Start/End: Complemental strand, 16678028 - 16677901
Alignment:
Q  32 tgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattg 131  Q
    |||||||||  ||||||||| ||||  ||| | |||||| | ||||||||  ||||| |||||||||| || ||||||||||| ||||||||| | ||||    
T  16678028 tgaaacaaagaagagagattgaataactgtagtggaatacttccttcaaaatggttagctctcaatataacaacttctaagttttgtgacatcttaattg 16677929  T
Q  132 gtatggttccataaaattcattttctcc 159  Q
    ||||||||||| ||||||||||||||||    
T  16677928 gtatggttccagaaaattcattttctcc 16677901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 17726708 - 17726850
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 120  Q
    ||||||| ||||| ||||||  ||||||||| |||||||||| |||||||| |||||||||  | ||| ||| ||||||||| | ||||||||  |||||    
T  17726708 caaggtccaagtgcaacaaagaagagagattgaatagttgtgcaggaataggcccttcaaaatgattacctcccaatatgaccatttctaagtgttgtga 17726807  T
Q  121 catcatgattggtatggttccataaaattcattttctcccaaa 163  Q
    ||||   | ||||||| ||||| ||||||||||||||||||||    
T  17726808 catctctactggtatgtttccagaaaattcattttctcccaaa 17726850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 19027937 - 19028079
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 120  Q
    ||||||| ||||| ||||||  ||||||||| |||||||||| |||||||| |||||||||  | ||| ||| ||||||||| | ||||||||  |||||    
T  19027937 caaggtccaagtgcaacaaagaagagagattgaatagttgtgcaggaataggcccttcaaaatgattacctcccaatatgaccatttctaagtgttgtga 19028036  T
Q  121 catcatgattggtatggttccataaaattcattttctcccaaa 163  Q
    ||||   | ||||||| ||||| ||||||||||||||||||||    
T  19028037 catctctactggtatgtttccagaaaattcattttctcccaaa 19028079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 19439447 - 19439359
Alignment:
Q  47 agattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtat 135  Q
    ||||| ||||||||| | |||||||| ||||||||| |||||||||||||||| || ||| ||||||| ||||||||||||||||||||    
T  19439447 agattgaatagttgttgtggaatagttccttcaaattggttatctctcaatattaccactcctaagttttgtgacatcatgattggtat 19439359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 19462018 - 19461867
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctca--atatgactacttctaagttctgt 118  Q
    ||||||| || |||||||||| || |||||| |||| |||||  |||||| ||||||||||| ||||| ||||||  |||||| ||||||||| |  |||    
T  19462018 caaggtccaaatgaaacaaattagtgagattgaataattgtgttggaatactcccttcaaattggttacctctcagtatatgaatacttctaaatattgt 19461919  T
Q  119 gacatcatgattggtatggttccataaaattcattttctcccaaattcatga 170  Q
    |  ||  | | ||||||||||||| ||||||||||||||||||| |||||||    
T  19461918 ggtatgttcaatggtatggttccagaaaattcattttctcccaagttcatga 19461867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 18104175 - 18104037
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 120  Q
    |||||||||||  || ||||| ||||||||| ||||||||| |  |||| |||||||||||| | ||  ||||||||||||  ||||||||||| |||||    
T  18104175 caaggtctaagaaaatcaaataagagagattgaatagttgttgcagaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtga 18104076  T
Q  121 catcatgattggtatggttccataaaattcattttctcc 159  Q
    |||    | |||||| |||||| ||||||||||||||||    
T  18104075 catacctactggtatagttccagaaaattcattttctcc 18104037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 170
Target Start/End: Complemental strand, 19425469 - 19425367
Alignment:
Q  68 atagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaattca 167  Q
    ||||||||||||||| ||||| ||||||||||||| |||||||| || ||||| |   | ||||||||| ||||  |||||| ||||||||||||| |||    
T  19425469 atagtcccttcaaattggttagctctcaatatgacgacttctaatttttgtgataagttcattggtatgattcctgaaaatttattttctcccaaaatca 19425370  T
Q  168 tga 170  Q
    |||    
T  19425369 tga 19425367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 15536362 - 15536145
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 120  Q
    ||||||||||||||||||||| ||||||||| |||| |||||| |||||| |||||||||||   ||   |||||||||||| ||| ||||||| |||||    
T  15536362 caaggtctaagtgaaacaaataagagagattgaataattgtggcggaataatcccttcaaatttattggttctcaatatgaccactactaagttttgtga 15536263  T
Q  121 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 220  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||  |   ||||| ||| || |||||| || ||  |||||||||||||| |      
T  15536262 catcatgattggtatggttccagaaaattcattttctcccaagttcatggtttgcaattgtttcgaagcagagaggtgcattggaacttcaccagacaaa 15536163  T
Q  221 ctattactccacaggttc 238  Q
    |||||| |||||||||||    
T  15536162 ctattattccacaggttc 15536145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 2709759 - 2709897
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 120  Q
    ||||||| |||||| |||| | ||||||||| |||| |||||  ||||||||||||| |||| ||||| ||||||||||||  ||||  || |  || ||    
T  2709759 caaggtccaagtgatacaacttagagagattgaataattgtgttggaatagtccctttaaattggttagctctcaatatgagaactttcaaatcttgcga 2709858  T
Q  121 catcatgattggtatggttccataaaattcattttctcc 159  Q
    |||| |||||||||| |||||| ||||||||||||||||    
T  2709859 catcttgattggtatagttccagaaaattcattttctcc 2709897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 233
Target Start/End: Original strand, 3275 - 3487
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 120  Q
    ||||||| ||||||||||||| ||||||||| |||| |||||  |||||||||||||| ||| ||||| |||| |||||||| |||||||| |  ||||     
T  3275 caaggtccaagtgaaacaaataagagagattgaataattgtgatggaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtgg 3374  T
Q  121 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 220  Q
    |||  ||||||||||||||||| |||| ||||||||| |||||||||||| |   ||||| |||||| |||||| ||      ||||||||||||| |||    
T  3375 catgttgattggtatggttccagaaaactcattttcttccaaattcatgaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagc 3474  T
Q  221 ctattactccaca 233  Q
     ||||||||||||    
T  3475 ttattactccaca 3487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 233
Target Start/End: Complemental strand, 6232 - 6020
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 120  Q
    ||||||| ||||||||||||| ||||||||| |||| |||||  |||||||||||||| ||| ||||| |||| |||||||| |||||||| |  ||||     
T  6232 caaggtccaagtgaaacaaataagagagattgaataattgtgatggaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtgg 6133  T
Q  121 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 220  Q
    |||  ||||||||||||||||| |||| ||||||||| |||||||||||| |   ||||| |||||| |||||| ||      ||||||||||||| |||    
T  6132 catgttgattggtatggttccagaaaactcattttcttccaaattcatgaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagc 6033  T
Q  221 ctattactccaca 233  Q
     ||||||||||||    
T  6032 ttattactccaca 6020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 233
Target Start/End: Original strand, 2744 - 2956
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 120  Q
    ||||||| ||||||||||||| ||||||||| |||| |||||  |||||||||||||| ||| ||||| |||| |||||||| |||||||| |  ||||     
T  2744 caaggtccaagtgaaacaaataagagagattgaataattgtgatggaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtgg 2843  T
Q  121 catcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagc 220  Q
    |||  ||||||||||||||||| |||| ||||||||| |||||||||||| |   ||||| |||||| |||||| ||      ||||||||||||| |||    
T  2844 catgttgattggtatggttccagaaaactcattttcttccaaattcatgaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagc 2943  T
Q  221 ctattactccaca 233  Q
     ||||||||||||    
T  2944 ttattactccaca 2956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 170
Target Start/End: Complemental strand, 21444 - 21304
Alignment:
Q  29 aagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatga 128  Q
    ||||||||||||| ||||||||| |||| |||||| |||||||||| ||| ||| ||||| |||| |||||||| |||||||| |  |||| |||  |||    
T  21444 aagtgaaacaaataagagagattgaataattgtggtggaatagtcc-ttcgaattggttagctcttaatatgaccacttctaaatattgtggcatgttga 21346  T
Q  129 ttggtatggttccataaaattcattttctcccaaattcatga 170  Q
    |||||||||||||| |||| ||||||||||||||||||||||    
T  21345 ttggtatggttccagaaaactcattttctcccaaattcatga 21304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 13666121 - 13666269
Alignment:
Q  21 caaggtctaagtgaaacaaatcagagagattaaatagttgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtga 120  Q
    ||||||||| ||||||||||| ||||||||||||||||||||| |||||| | |||||||||   || |||||||||||||| ||||  |||||  ||||    
T  13666121 caaggtctaggtgaaacaaataagagagattaaatagttgtgggggaatactgccttcaaatttattttctctcaatatgaccacttgaaagtttggtga 13666220  T
Q  121 catcatgattggtatggttccataaaattcattttctcccaaattcatg 169  Q
     |||| ||||| ||||||||||| ||||||||||||||| || ||||||    
T  13666221 aatcaagattgttatggttccattaaattcattttctcctaagttcatg 13666269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 231
Target Start/End: Complemental strand, 8460336 - 8460164
Alignment:
Q  59 tgtggaggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctc 158  Q
    ||||| |||||| | ||||||||| ||||  ||||||||||||| |||||||| | | |||||||  | ||||| ||||||||| |||||| ||||||||    
T  8460336 tgtggtggaatattgccttcaaattggttggctctcaatatgaccacttctaaataccgtgacatgttcattggaatggttccagaaaattgattttctc 8460237  T
Q  159 ccaaattcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagcctattactcca 231  Q
    |||| || || | |   ||||| ||| || || ||| || ||  |||||||| ||||||||||||||||||||    
T  8460236 ccaagttaatcatttccaattgtttcaaatcaaagaggtccaccggaacttcgccagatagcctattactcca 8460164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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