View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_high_72 (Length: 240)
Name: NF10466_high_72
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_high_72 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 52421614 - 52421841
Alignment:
| Q |
1 |
cttagttgatcccatgatgcaatttattgattcaaccgt-gaaaataagttgtgtttgatgcaaaacttatcttatttgtgcaccataaaactagactta |
99 |
Q |
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| T |
52421614 |
cttagttgatcccatgatgcaatttattgattcaaccgtcgaaaataagttgtgtttgatgcaaaacttatcttatttgtgcaccataaaactagactta |
52421713 |
T |
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| Q |
100 |
acaaacagtatgaaaatctgaacctaagtttgtctgatttattaaaagtgtgattttgatcaaccgtgttattttgacagggaaatgacattctttcttt |
199 |
Q |
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| T |
52421714 |
acaaacagtatgaaaatctgaacctaagtttgtctgatttattaaaagtgtgattttgatcaactgtgttattttgacagggaaatgacattctttcttt |
52421813 |
T |
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| Q |
200 |
ggaatggctgtccgatattgtggatgat |
227 |
Q |
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| T |
52421814 |
ggaatggctgtccgatattgtggatgat |
52421841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 42713811 - 42713865
Alignment:
| Q |
40 |
gaaaataagttgtgtttgatgcaaaacttatcttatttgtgcaccataaaactag |
94 |
Q |
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| T |
42713811 |
gaaaataacttgtgcatgatgcaaaacttatctcatttgtgcaccataaaactag |
42713865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 14150329 - 14150414
Alignment:
| Q |
142 |
taaaagtgtgattttgatcaaccgtgttattttgacagggaaatgacattctttctttggaatggctgtccgatattgtggatgat |
227 |
Q |
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| T |
14150329 |
taaaagtgtgattttgatcaatcttgttattattacacggcaatgacattcttcaattggattggttgtccaatattgtggatgat |
14150414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 14151368 - 14151291
Alignment:
| Q |
119 |
gaacctaagttt-gtctgatttattaaaagtgtgattttgatcaaccgtgttattttgacagggaaatgacattcttt |
195 |
Q |
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| T |
14151368 |
gaacctaagttttgtctattttaataaaagtgtgattttgatcaatcttgttattactacagggcaatgacattcttt |
14151291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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