View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_high_82 (Length: 233)
Name: NF10466_high_82
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_high_82 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 11118895 - 11118694
Alignment:
| Q |
15 |
tcagttgtcactaaaattcgaatccaatgtcacttatagttttactaacctacaaatactgaaattatcttctgtcaacttgatcgaatttcacaactta |
114 |
Q |
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| T |
11118895 |
tcagttgtcactaaaattcgaatccaatgtcacttatagttttactaacctacaaatactcaaattatcttctgtcaacttgatcgaatttcacaactta |
11118796 |
T |
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| Q |
115 |
caaggagaatttccaagtttgtcacatctggatctttccaaaaacaaacttaatggaagaatgcccaattggtttcttggaaatatttattggcaatctg |
214 |
Q |
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| T |
11118795 |
caaggagaatttccaagtttgtcacatctggatctttccaaaaacaaacttaatggaagaatgcccaattggtttcttggaaatatttattggcaatctg |
11118696 |
T |
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| Q |
215 |
tg |
216 |
Q |
| |
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|| |
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| T |
11118695 |
tg |
11118694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 125
Target Start/End: Complemental strand, 42124246 - 42124146
Alignment:
| Q |
25 |
ctaaaattcgaatccaatgtcacttatagttttactaacctacaaatactgaaattatcttctgtcaacttgatcgaatttcacaacttacaaggagaat |
124 |
Q |
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| T |
42124246 |
ctaaattttgaatccaatgtcaattatagtttttctagcctacaagtattggaattgtcttctgtcaatttgatcaaattccataatttacaaggagaat |
42124147 |
T |
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| Q |
125 |
t |
125 |
Q |
| |
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| |
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| T |
42124146 |
t |
42124146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 42124114 - 42124078
Alignment:
| Q |
157 |
aacaaacttaatggaagaatgcccaattggtttcttg |
193 |
Q |
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| T |
42124114 |
aacaaacttcatggaagaatgcccaattggttacttg |
42124078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 25522494 - 25522542
Alignment:
| Q |
140 |
atctggatctttccaaaaacaaacttaatggaagaatgcccaattggtt |
188 |
Q |
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|||| ||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
25522494 |
atcttgatctttccaataacaaacttgatggaagaatgcccaattggtt |
25522542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 32681392 - 32681465
Alignment:
| Q |
19 |
ttgtcactaaaattcgaatccaatgtcacttatagttttactaacctacaaatactgaaattatcttctgtcaa |
92 |
Q |
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||||||||||| || ||||||||||||| ||||| |||| || ||||||||| | || |||| |||||| |||| |
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| T |
32681392 |
ttgtcactaaactttgaatccaatgtcagttatacttttccttacctacaaacattggaattgtcttctatcaa |
32681465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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