View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_high_85 (Length: 222)
Name: NF10466_high_85
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_high_85 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 22810184 - 22809989
Alignment:
| Q |
11 |
gagagaagaacaaatgtagagaatatgcatcttgatgccaaatcgtaatgct---tctttttcctgagccattgacatgttctataatttcagtacattg |
107 |
Q |
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| T |
22810184 |
gagaaaagaacaaatgtagagaatatgcatcttgatgccaaatcgtaatgctacttctttttcctgagccattgacatgttctataatttcagtacattc |
22810085 |
T |
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| Q |
108 |
atatctcagttactttcatatttgaatcagttgcattttactgtataatcaactatatttcttgttcttaattatcaattacttgcaaattagaga |
203 |
Q |
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| T |
22810084 |
atatctcagttactttcatattcgaatcagttgcattttactgtataatcaactatacttcttgttcttacttatcaattacttgcaaattagaga |
22809989 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 40381439 - 40381394
Alignment:
| Q |
158 |
aactatatttcttgttcttaattatcaattacttgcaaattagaga |
203 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40381439 |
aactatatttcttgttcttaattttcaattacttgcaaattagaga |
40381394 |
T |
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