View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_high_9 (Length: 580)
Name: NF10466_high_9
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 503
Target Start/End: Original strand, 7375353 - 7375862
Alignment:
| Q |
18 |
agagaaggaagagagtgtgggaacaagtttgggggaggaaggaattgaggaaagtgtggatgtgaaagaaga---------------aaatggatttgag |
102 |
Q |
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| T |
7375353 |
agagaaggaagagagtgtgggaacaagtttggtggaggaaggaattaaggaaagtgtagatgtgaaagaagaggagggtagaattggaaatgaatttgag |
7375452 |
T |
|
| Q |
103 |
gaggttaagg------aggaagaagatggagggaatagaaaaatgttgaaaaggatgatggaggacaatgaaaagatgatggaaatgatgtcacaattat |
196 |
Q |
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| T |
7375453 |
gaggagaattgttataaggaagaagatggagggaatagaaaaatgttgaaaaggatgatggaggacaatgagaagatgatggaaatgatggcacaattat |
7375552 |
T |
|
| Q |
197 |
ttgagaggaatgaaaagcaaacaacacttcttacatctctcacacaaagggtggagcagcttgagagagcttttacttttgacaagttgaggaggaagaa |
296 |
Q |
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| T |
7375553 |
ttgagaggaatgagaagcaaacaacacttcttacatctcttacacaaagagtggagcagcttgagagagcttttacttttgacaagttgaggaggaagaa |
7375652 |
T |
|
| Q |
297 |
taagaagaggaggaatcttgatgccaaacacagacataatggttgcatttgatgacttttgctttctttaatgatcttgtttttgtaatgaa-tttgt-- |
393 |
Q |
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| T |
7375653 |
taagaagaggaggaatgttgatgccaaacacagacataatggttgcatttgatgacttttgctttgtttaatgatcttgtctttgtaatgaattttgttg |
7375752 |
T |
|
| Q |
394 |
tctctcaatcatgtgtttattgtgatcaatgtaactaacttcaatgaaagtggcttccaaactctcttgacaagtgatggatcataaaattcagccaaca |
493 |
Q |
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| T |
7375753 |
tctctcaatcatgtgtttattgtgatcaatgtaactaacttcaaagaaagtggcttccaaattctcttgacaagtgatggatcataaaattcagccaaca |
7375852 |
T |
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| Q |
494 |
gcaaagtaac |
503 |
Q |
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| T |
7375853 |
gcaaagtaac |
7375862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 449
Target Start/End: Complemental strand, 7278486 - 7278029
Alignment:
| Q |
18 |
agagaaggaagagagtgtgggaacaagtttgggggaggaaggaattgaggaaagtgtggatgtgaaagaaga---------------aaatggatttgag |
102 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| ||||| ||||||| |
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| T |
7278486 |
agagaaggaagagagtgtgggaacaagtttggtggaggaaggaattaaggaaagtgtagatgtgaaagaagaggagggtagaattggaaatgaatttgag |
7278387 |
T |
|
| Q |
103 |
gaggttaagg------aggaagaagatggagggaatagaaaaatgttgaaaaggatgatggaggacaatgaaaagatgatggaaatgatgtcacaattat |
196 |
Q |
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| T |
7278386 |
gaggagaattgttataaggaagaagatggagggaatagaaaaatgttgaaaaggatgatggaggacaatgagaagatgatggaaatgatggcacaattat |
7278287 |
T |
|
| Q |
197 |
ttgagaggaatgaaaagcaaacaacacttcttacatctctcacacaaagggtggagcagcttgagagagcttttacttttgacaagttgaggaggaagaa |
296 |
Q |
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| T |
7278286 |
ttgagaggaatgagaagcaaacaacacttcttacatctcttacacaaagagtggagcagcttgagagagcatttacttttgacaagttgaggaggaagaa |
7278187 |
T |
|
| Q |
297 |
taagaagaggaggaatcttgatgccaaacacagacataatggttgcatttgatgacttttgctttctttaatgatcttgtttttgtaatgaa-tttgt-- |
393 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |
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| T |
7278186 |
taagaagaggaggaatgttgatgccaaacacagacataatggttgcatttgatgacttttgctttgtttaatgatcttgtctttgtaatgaattttgttg |
7278087 |
T |
|
| Q |
394 |
tctctcaatcatgtgtttattgtg--atcaatgtaactaacttcaatgaaagtggctt |
449 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
7278086 |
tctctcaatcatgtgtttattgtgatatcagtgtaactaacttcaatgaaagtggctt |
7278029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 524 - 561
Target Start/End: Original strand, 7375865 - 7375902
Alignment:
| Q |
524 |
caaatatagtgctacagattacaacttcatattaaaaa |
561 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
7375865 |
caaatatagtgctacagattacaacttcatattaaaaa |
7375902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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