View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_1 (Length: 947)
Name: NF10466_low_1
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 548; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 10 - 596
Target Start/End: Original strand, 48455622 - 48456211
Alignment:
| Q |
10 |
gagaagcaaaggtggccggctggtggaggctgcttcgtcggaaattgctcttcgccattggaaaagcaattctccaaggtcattcatttcttttgtggtt |
109 |
Q |
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| T |
48455622 |
gagaagcaaaggtggccggctggtggaggttgcttcgtcggaaattgctcttcgccattggaaaagcaattctccaaggtcattcatttcttttgtggtt |
48455721 |
T |
|
| Q |
110 |
gtaggaaactcccaatcgaagtcgattccatcgaatccaaaggttcgagcgacttggattgtagagttgatgaatgtagcacgtgccgtggggtcagagg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48455722 |
gtaggaaactcccaatcgaagtcgattccatcgaatccaaaggttcgagcgacttggattgtagagttgatgaaggtagcacgtgccgtggggtcagagg |
48455821 |
T |
|
| Q |
210 |
cgatgaaagcaaagagtgtggaattgctagttgcacctccaatggaaaggagggtaggaatgggaggggttttagttttgaaagtgttggtgaaagtagt |
309 |
Q |
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| T |
48455822 |
caatgaaagcaaagagtgtggaattgctagttgcacctccaatggaaaggagggtaggaatgggaggggttttagttttgaaagtgttggtgaaagtagt |
48455921 |
T |
|
| Q |
310 |
gagggaggtggctacagttgttgaa---tcttcttcttcttctagcttataagtgaatttgttgggtgaaacaaaagcgtagaaaatgtgagtgaaaagt |
406 |
Q |
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| T |
48455922 |
gagggaggtggctacagttgttgaatcttcttcttcttcttctagcttataagtgaatttgttgggtgaaacaaaagcgtagaaaatgtgagtgaaaagt |
48456021 |
T |
|
| Q |
407 |
gatgtatctatggaagctggagggaaaagtgggttttctatccagtatatgcctttcacacgtgtagttgatgatggtgatgttgtgcttgtggaacttt |
506 |
Q |
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| T |
48456022 |
gatgtatctatggaagatggagggaaaagtgggttttctatccagtatatgcctttcacacgtgtggttgatgatggtgatggtgtgcttttggaacttt |
48456121 |
T |
|
| Q |
507 |
tggcggctagggctaagagaattaatactaaagttaggaactgtttgagtttgaggaagtttgccatgacaaaatctatataatgttttg |
596 |
Q |
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| T |
48456122 |
tggcggctagggctaagagaattaatactaaagttaggaactgtttgagtttgaggaagtttgccatgacaaaatctatataatgttttg |
48456211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 678 - 860
Target Start/End: Original strand, 48456327 - 48456502
Alignment:
| Q |
678 |
aagtggcatgtcacttttatttaaaagctggcataatcttttattattggttcgaatcaaatctcaactcaaaggttcccgcgttgcatggaagactcca |
777 |
Q |
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| T |
48456327 |
aagtggcatgtcacttttatttaaaagctggcataatcttttgttattggttcgaatcaaatctcaactcaaaggttcccgcgttgcatggaagactcga |
48456426 |
T |
|
| Q |
778 |
aggatatgatatggttgacaatcattaattacaatatttatattttattttatcatattatacgtagaatatgttccccaatt |
860 |
Q |
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| T |
48456427 |
aggatatgatatggttgacaatcattaattacaata-------tttattttatcatattatacgtagaatatgttccccaatt |
48456502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 10 - 315
Target Start/End: Original strand, 48461078 - 48461383
Alignment:
| Q |
10 |
gagaagcaaaggtggccggctggtggaggctgcttcgtcggaaattgctcttcgccattggaaaagcaattctccaaggtcattcatttcttttgtggtt |
109 |
Q |
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||||||||| |||||||||| ||||| ||| |||| ||||| || ||| ||||||||||||| |||| |||||| ||||| ||||||||||| ||| || |
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| T |
48461078 |
gagaagcaacggtggccggccggtggtggcgccttcatcggagatagcttttcgccattggaagagcatttctccgaggtcgttcatttctttagtgttt |
48461177 |
T |
|
| Q |
110 |
gtaggaaactcccaatcgaagtcgattccatcgaatccaaaggttcgagcgacttggattgtagagttgatgaatgtagcacgtgccgtggggtcagagg |
209 |
Q |
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| T |
48461178 |
ttaggaaactcccaatccaagtcaattccatcgaatccaaatgtacgagcaacgtcgattgtagagttaatgaaggcggcacatgcgggtggatcggagg |
48461277 |
T |
|
| Q |
210 |
cgatgaaagcaaagagtgtggaattgctagttgcacctccaatggaaaggagggtaggaatgggaggggttttagttttgaaagtgttggtgaaagtagt |
309 |
Q |
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||||||| || || | | ||||||||| ||||||||||||||||| ||| |||| ||||||| ||| |||||||| || ||||||||||| | |
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| T |
48461278 |
cgatgaaggccaacaaggatgaattgctacctgcacctccaatggaaaagagagtagctgcaggaggggattttgttttgaaggttttggtgaaagtgtt |
48461377 |
T |
|
| Q |
310 |
gaggga |
315 |
Q |
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| T |
48461378 |
gaggga |
48461383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 385 - 595
Target Start/End: Original strand, 48461444 - 48461648
Alignment:
| Q |
385 |
gtagaaaatgtgagtgaaaagtgatgtatctatggaagctggagggaaaagtgggttttctatccagtatatgcctttcacacgtgtagttgatgatggt |
484 |
Q |
| |
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|||||| |||||||| || |||||||| |||| | || ||||||||||| ||| ||||||| |||||| || |||||||||||||| ||||||||| | |
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| T |
48461444 |
gtagaagatgtgagtaaagagtgatgtgtctactgtagttggagggaaaaatggattttctaaccagtaaatacctttcacacgtgtgattgatgatgat |
48461543 |
T |
|
| Q |
485 |
gatgttgtgcttgtggaacttttggcggctagggctaagagaattaatactaaagttaggaactgtttgagtttgaggaagtttgccatgacaaaatcta |
584 |
Q |
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| T |
48461544 |
gatgatgtg------gaacttttggtggctagggctaagagaattaatgctaaagtgagtaaatgtttcaggttgaggatgttagccatgacaaaatcta |
48461637 |
T |
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| Q |
585 |
tataatgtttt |
595 |
Q |
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|||||||||| |
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| T |
48461638 |
aataatgtttt |
48461648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 861 - 930
Target Start/End: Original strand, 48456534 - 48456603
Alignment:
| Q |
861 |
acacaaaactatccatccttcgtactgttgttctacattaatcatacttaagcagcgttgagtttagaat |
930 |
Q |
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| T |
48456534 |
acacaaaactatccatccttcgtactgttgttctacattaatcatacttaagcagcgttgagtttagaat |
48456603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 592 - 626
Target Start/End: Original strand, 48456227 - 48456261
Alignment:
| Q |
592 |
ttttgcttaatgatgagatagatagttataaggaa |
626 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
48456227 |
ttttgcttaatgatgagatagatagttataaggaa |
48456261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 627 - 661
Target Start/End: Original strand, 48456292 - 48456326
Alignment:
| Q |
627 |
tttggatactgtatatagttaaggtgaattaaggg |
661 |
Q |
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| T |
48456292 |
tttggatactgtatatagttaaggtgaattaaggg |
48456326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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