View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10466_low_101 (Length: 214)

Name: NF10466_low_101
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10466_low_101
NF10466_low_101
[»] chr4 (20 HSPs)
chr4 (15-92)||(27586393-27586470)
chr4 (48-85)||(3387017-3387054)
chr4 (48-85)||(21076094-21076131)
chr4 (48-85)||(21246107-21246144)
chr4 (48-85)||(23147673-23147710)
chr4 (48-85)||(25938633-25938670)
chr4 (48-85)||(29148821-29148858)
chr4 (48-85)||(42053072-42053109)
chr4 (48-85)||(46030472-46030509)
chr4 (48-85)||(52595813-52595850)
chr4 (48-85)||(54978951-54978988)
chr4 (50-85)||(8614810-8614845)
chr4 (43-85)||(2073431-2073473)
chr4 (38-76)||(14595587-14595625)
chr4 (43-85)||(34459436-34459478)
chr4 (48-85)||(2224762-2224799)
chr4 (25-86)||(7117760-7117820)
chr4 (48-85)||(8066226-8066263)
chr4 (43-75)||(7250409-7250441)
chr4 (49-85)||(42755610-42755646)
[»] chr1 (16 HSPs)
chr1 (25-85)||(2465392-2465452)
chr1 (15-79)||(236736-236800)
chr1 (48-85)||(9222501-9222538)
chr1 (48-85)||(44327744-44327781)
chr1 (49-85)||(12560428-12560464)
chr1 (43-85)||(945733-945775)
chr1 (43-85)||(2975059-2975101)
chr1 (43-85)||(25059354-25059396)
chr1 (43-85)||(32835323-32835365)
chr1 (48-85)||(610968-611005)
chr1 (48-85)||(13796884-13796921)
chr1 (48-85)||(25815137-25815174)
chr1 (48-85)||(29054417-29054454)
chr1 (49-85)||(2433471-2433507)
chr1 (50-86)||(2501826-2501862)
chr1 (43-75)||(19506637-19506669)
[»] chr7 (14 HSPs)
chr7 (24-79)||(24430141-24430196)
chr7 (48-85)||(16567832-16567869)
chr7 (48-85)||(16597793-16597830)
chr7 (48-85)||(27398854-27398891)
chr7 (48-85)||(31455165-31455202)
chr7 (48-85)||(39414830-39414867)
chr7 (48-85)||(46181478-46181515)
chr7 (48-85)||(46783333-46783370)
chr7 (49-85)||(3551345-3551381)
chr7 (23-61)||(3551381-3551419)
chr7 (48-86)||(35092548-35092586)
chr7 (48-85)||(10066069-10066106)
chr7 (49-85)||(12920810-12920846)
chr7 (31-79)||(43394127-43394175)
[»] chr6 (8 HSPs)
chr6 (14-73)||(28770048-28770107)
chr6 (48-79)||(13534000-13534031)
chr6 (47-85)||(29641271-29641309)
chr6 (48-85)||(1329367-1329404)
chr6 (48-85)||(6337452-6337489)
chr6 (48-85)||(33328854-33328891)
chr6 (48-85)||(33331866-33331903)
chr6 (43-75)||(6938302-6938334)
[»] chr5 (11 HSPs)
chr5 (48-85)||(24488904-24488941)
chr5 (49-85)||(36323270-36323306)
chr5 (23-85)||(41983470-41983530)
chr5 (43-85)||(6224657-6224699)
chr5 (51-85)||(14088530-14088564)
chr5 (43-85)||(18595615-18595657)
chr5 (43-85)||(22632058-22632100)
chr5 (48-85)||(15719003-15719040)
chr5 (48-85)||(36470312-36470349)
chr5 (49-85)||(4572528-4572564)
chr5 (43-75)||(29456045-29456077)
[»] chr3 (17 HSPs)
chr3 (48-85)||(6408829-6408866)
chr3 (48-85)||(24987223-24987260)
chr3 (48-85)||(41924224-41924261)
chr3 (24-71)||(2150523-2150570)
chr3 (50-85)||(14418470-14418505)
chr3 (43-85)||(11671979-11672021)
chr3 (43-85)||(12905864-12905906)
chr3 (43-85)||(23298144-23298186)
chr3 (43-85)||(39952761-39952803)
chr3 (43-85)||(48080303-48080345)
chr3 (43-85)||(50508688-50508730)
chr3 (48-85)||(39352714-39352751)
chr3 (48-85)||(44792454-44792491)
chr3 (48-85)||(46584820-46584857)
chr3 (48-85)||(49360209-49360246)
chr3 (43-75)||(5040880-5040912)
chr3 (49-85)||(19618940-19618976)
[»] chr2 (10 HSPs)
chr2 (48-85)||(3329419-3329456)
chr2 (48-85)||(4481313-4481350)
chr2 (48-85)||(17961266-17961303)
chr2 (48-85)||(23231991-23232028)
chr2 (48-85)||(30241684-30241721)
chr2 (48-85)||(33867357-33867394)
chr2 (43-85)||(667783-667825)
chr2 (48-85)||(4592005-4592042)
chr2 (48-85)||(12758014-12758051)
chr2 (48-85)||(29155576-29155613)
[»] chr8 (9 HSPs)
chr8 (24-85)||(25178777-25178844)
chr8 (43-85)||(1667420-1667462)
chr8 (43-85)||(6109876-6109918)
chr8 (23-61)||(30801469-30801507)
chr8 (48-85)||(3616682-3616719)
chr8 (48-85)||(7057867-7057904)
chr8 (48-85)||(24789772-24789809)
chr8 (52-85)||(30801510-30801543)
chr8 (43-75)||(2620783-2620815)
[»] scaffold0005 (1 HSPs)
scaffold0005 (38-76)||(221753-221791)


Alignment Details
Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 27586470 - 27586393
Alignment:
Q  15 gatgaaactgttattgtattaagtagttttttcgtttaggcttaaatagctaaataaattaattagttatattgtctt 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27586470 gatgaaactgttattgtattaagtagttttttcgtttaggcttaaatagctaaataaattaattagttatattttctt 27586393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 3387054 - 3387017
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  3387054 gtttaggcttaaatagctaaataaattaattaattata 3387017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 21076094 - 21076131
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  21076094 gtttaggcttaaatagctaaataaattaattaattata 21076131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 21246107 - 21246144
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  21246107 gtttaggcttaaatagctaaataaattaattaattata 21246144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 23147673 - 23147710
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  23147673 gtttaggcttaaatagctaaataaattaattaattata 23147710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 25938633 - 25938670
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  25938633 gtttaggcttaaatagctaaataaattaattaattata 25938670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 29148858 - 29148821
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  29148858 gtttaggcttaaatagctaaataaattaattaattata 29148821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 42053109 - 42053072
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  42053109 gtttaggcttaaatagctaaataaattaattaattata 42053072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 46030472 - 46030509
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  46030472 gtttaggcttaaatagctaaataaattaattaattata 46030509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 52595813 - 52595850
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  52595813 gtttaggcttaaatagctaaataaattaattaattata 52595850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 54978988 - 54978951
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  54978988 gtttaggcttaaatagctaaataaattaattaattata 54978951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 8614810 - 8614845
Alignment:
Q  50 ttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||| |||||    
T  8614810 ttaggcttaaatagctaaataaattaattaattata 8614845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 2073473 - 2073431
Alignment:
Q  43 ttttcgtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||| |||||||||||||||||||||||||||| ||| |||||    
T  2073473 ttttagtttaggcttaaatagctaaataaattatttaattata 2073431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 14595587 - 14595625
Alignment:
Q  38 tagttttttcgtttaggcttaaatagctaaataaattaa 76  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  14595587 tagtttttaggtttaggcttaaatagctaaataaattaa 14595625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 34459478 - 34459436
Alignment:
Q  43 ttttcgtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||| |||||||||||||||||||||||||||| ||| |||||    
T  34459478 ttttagtttaggcttaaatagctaaataaattatttaattata 34459436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 2224799 - 2224762
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  2224799 gtttaagcttaaatagctaaataaattaattaattata 2224762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 7117820 - 7117760
Alignment:
Q  25 ttattgtattaagtagttttttcgtttaggcttaaatagctaaataaattaattagttatat 86  Q
    |||||||||||||||| |||   ||||| | |||||||||||||||||||||||| ||||||    
T  7117820 ttattgtattaagtaggtttag-gtttatgtttaaatagctaaataaattaattaattatat 7117760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 8066226 - 8066263
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  8066226 gtttagacttaaatagctaaataaattaattaattata 8066263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 7250441 - 7250409
Alignment:
Q  43 ttttcgtttaggcttaaatagctaaataaatta 75  Q
    |||| ||||||||||||||||||||||||||||    
T  7250441 ttttagtttaggcttaaatagctaaataaatta 7250409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 42755610 - 42755646
Alignment:
Q  49 tttaggcttaaatagctaaataaattaattagttata 85  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  42755610 tttaggcttaaatagctaaattaattaattaattata 42755646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 2465452 - 2465392
Alignment:
Q  25 ttattgtattaagtagttttttcgtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||  |||||| ||||||||||||||||||||||||| |||||    
T  2465452 ttattgtattaagtagtttttaggtttagacttaaatagctaaataaattaattaattata 2465392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 236736 - 236800
Alignment:
Q  15 gatgaaactgttattgtattaagtagttttttcgtttaggcttaaatagctaaataaattaatta 79  Q
    |||||| |||||||||||||||||| |||||| ||||||  |||||||||||||| |||||||||    
T  236736 gatgaagctgttattgtattaagtaattttttggtttagatttaaatagctaaattaattaatta 236800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 9222501 - 9222538
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  9222501 gtttaggcttaaatagctaaataaattaattaattata 9222538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 44327781 - 44327744
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  44327781 gtttaggcttaaatagctaaataaattaattaattata 44327744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 12560464 - 12560428
Alignment:
Q  49 tttaggcttaaatagctaaataaattaattagttata 85  Q
    ||||||||||||||||||||||||||||||| |||||    
T  12560464 tttaggcttaaatagctaaataaattaattaattata 12560428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 945733 - 945775
Alignment:
Q  43 ttttcgtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||| |||||||||||||||||||||||||||| ||| |||||    
T  945733 ttttagtttaggcttaaatagctaaataaattatttaattata 945775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 2975101 - 2975059
Alignment:
Q  43 ttttcgtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||| |||||||||||||||||||||||||||| ||| |||||    
T  2975101 ttttagtttaggcttaaatagctaaataaattatttaattata 2975059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 25059354 - 25059396
Alignment:
Q  43 ttttcgtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||| |||||||||||||||||||||||||||| ||| |||||    
T  25059354 ttttagtttaggcttaaatagctaaataaattatttaattata 25059396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 32835365 - 32835323
Alignment:
Q  43 ttttcgtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||| |||||||||||||||||||||||||||| ||| |||||    
T  32835365 ttttagtttaggcttaaatagctaaataaattatttaattata 32835323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 610968 - 611005
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  610968 gtttaggcttaaatagcttaataaattaattaattata 611005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 13796921 - 13796884
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  13796921 gtttaggcttaaatagctaaattaattaattaattata 13796884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 25815174 - 25815137
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  25815174 gtttaggcttaaatagctaaataaaataattaattata 25815137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 29054454 - 29054417
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  29054454 gtttaggcttaaatagttaaataaattaattaattata 29054417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 2433471 - 2433507
Alignment:
Q  49 tttaggcttaaatagctaaataaattaattagttata 85  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  2433471 tttaggcttaaatagttaaataaattaattaattata 2433507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 2501826 - 2501862
Alignment:
Q  50 ttaggcttaaatagctaaataaattaattagttatat 86  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  2501826 ttagacttaaatagctaaataaattaattaattatat 2501862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 19506637 - 19506669
Alignment:
Q  43 ttttcgtttaggcttaaatagctaaataaatta 75  Q
    |||| ||||||||||||||||||||||||||||    
T  19506637 ttttagtttaggcttaaatagctaaataaatta 19506669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 24430196 - 24430141
Alignment:
Q  24 gttattgtattaagtagttttttcgtttaggcttaaatagctaaataaattaatta 79  Q
    ||||||||||||||||||||||  |||||||||||||||| |||||| ||||||||    
T  24430196 gttattgtattaagtagtttttaggtttaggcttaaatagttaaatacattaatta 24430141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 16567832 - 16567869
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  16567832 gtttaggcttaaatagctaaataaattaattaattata 16567869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 16597830 - 16597793
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  16597830 gtttaggcttaaatagctaaataaattaattaattata 16597793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 27398854 - 27398891
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  27398854 gtttaggcttaaatagctaaataaattaattaattata 27398891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 31455165 - 31455202
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  31455165 gtttaggcttaaatagctaaataaattaattaattata 31455202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 39414830 - 39414867
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  39414830 gtttaggcttaaatagctaaataaattaattaattata 39414867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 46181478 - 46181515
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  46181478 gtttaggcttaaatagctaaataaattaattaattata 46181515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 46783333 - 46783370
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  46783333 gtttaggcttaaatagctaaataaattaattaattata 46783370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 3551381 - 3551345
Alignment:
Q  49 tttaggcttaaatagctaaataaattaattagttata 85  Q
    ||||||||||||||||||||||||||||||| |||||    
T  3551381 tttaggcttaaatagctaaataaattaattaattata 3551345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 3551419 - 3551381
Alignment:
Q  23 tgttattgtattaagtagttttttcgtttaggcttaaat 61  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  3551419 tgttattgtattaagtagttttttggtttaggtttaaat 3551381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 35092586 - 35092548
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttatat 86  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  35092586 gtttaggcttaaatagttaaataaattaattatttatat 35092548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 10066106 - 10066069
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  10066106 gtttaggcttaaatagttaaataaattaattaattata 10066069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 12920846 - 12920810
Alignment:
Q  49 tttaggcttaaatagctaaataaattaattagttata 85  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  12920846 tttaggcttaaatagctaaattaattaattaattata 12920810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 43394175 - 43394127
Alignment:
Q  31 tattaagtagttttttcgtttaggcttaaatagctaaataaattaatta 79  Q
    ||||||| |||||||  |||||||||||||||| ||| |||||||||||    
T  43394175 tattaaggagtttttaggtttaggcttaaatagttaagtaaattaatta 43394127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 28770048 - 28770107
Alignment:
Q  14 agatgaaactgttattgtattaagtagttttttcgtttaggcttaaatagctaaataaat 73  Q
    |||||||  ||||||||||||||||||||||||  |||||| ||||||||||||||||||    
T  28770048 agatgaagttgttattgtattaagtagtttttttatttaggtttaaatagctaaataaat 28770107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 79
Target Start/End: Complemental strand, 13534031 - 13534000
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaatta 79  Q
    ||||||||||||||||||||||||||||||||    
T  13534031 gtttaggcttaaatagctaaataaattaatta 13534000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 29641309 - 29641271
Alignment:
Q  47 cgtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  29641309 cgtttaggattaaatagctaaataaattaattaattata 29641271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 1329404 - 1329367
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  1329404 gtttaggcttaaatagctaaattaattaattaattata 1329367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 6337452 - 6337489
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  6337452 gtttaggcttaaatagctaaattaattaattaattata 6337489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 33328854 - 33328891
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  33328854 gtttaggcttaaataactaaataaattaattaattata 33328891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 33331866 - 33331903
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  33331866 gtttaggcttaaataactaaataaattaattaattata 33331903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 6938302 - 6938334
Alignment:
Q  43 ttttcgtttaggcttaaatagctaaataaatta 75  Q
    |||| ||||||||||||||||||||||||||||    
T  6938302 ttttagtttaggcttaaatagctaaataaatta 6938334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 24488941 - 24488904
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24488941 gtttaggcttaaatagctaaataaattaattagttata 24488904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 36323270 - 36323306
Alignment:
Q  49 tttaggcttaaatagctaaataaattaattagttata 85  Q
    ||||||||||||||||||||||||||||||| |||||    
T  36323270 tttaggcttaaatagctaaataaattaattaattata 36323306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 41983470 - 41983530
Alignment:
Q  23 tgttattgtattaagtagttttttcgtttaggcttaaatagctaaataaattaattagttata 85  Q
    ||||||||||||||| ||||||   ||||||||||||||| |||||||||||| ||| |||||    
T  41983470 tgttattgtattaagcagtttta--gtttaggcttaaatatctaaataaattatttaattata 41983530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 6224699 - 6224657
Alignment:
Q  43 ttttcgtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||| |||||||||||||||||||||||||||| ||| |||||    
T  6224699 ttttagtttaggcttaaatagctaaataaattatttaattata 6224657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 14088530 - 14088564
Alignment:
Q  51 taggcttaaatagctaaataaattaattagttata 85  Q
    ||||||||||||||||||||||||||||| |||||    
T  14088530 taggcttaaatagctaaataaattaattaattata 14088564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 18595615 - 18595657
Alignment:
Q  43 ttttcgtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||| |||||||||||||||||||||||||||| ||| |||||    
T  18595615 ttttagtttaggcttaaatagctaaataaattatttaattata 18595657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 22632100 - 22632058
Alignment:
Q  43 ttttcgtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||| |||||||||||||||||||||||||||| ||| |||||    
T  22632100 ttttagtttaggcttaaatagctaaataaattatttaattata 22632058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 15719040 - 15719003
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  15719040 gtttaggcttaaatagctaaattaattaattaattata 15719003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 36470349 - 36470312
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  36470349 gtttaggcttaaatagcaaaataaattaattaattata 36470312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 4572528 - 4572564
Alignment:
Q  49 tttaggcttaaatagctaaataaattaattagttata 85  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  4572528 tttagacttaaatagctaaataaattaattatttata 4572564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 29456045 - 29456077
Alignment:
Q  43 ttttcgtttaggcttaaatagctaaataaatta 75  Q
    |||| ||||||||||||||||||||||||||||    
T  29456045 ttttagtttaggcttaaatagctaaataaatta 29456077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 6408829 - 6408866
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  6408829 gtttaggcttaaatagctaaataaattaattaattata 6408866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 24987260 - 24987223
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  24987260 gtttaggcttaaatagctaaataaattaattaattata 24987223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 41924224 - 41924261
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  41924224 gtttaggcttaaatagctaaataaattaattaattata 41924261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 2150570 - 2150523
Alignment:
Q  24 gttattgtattaagtagttttttcgtttaggcttaaatagctaaataa 71  Q
    |||| |||||||||||||||||  ||||||||||||||| ||||||||    
T  2150570 gttactgtattaagtagtttttaggtttaggcttaaataactaaataa 2150523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 14418470 - 14418505
Alignment:
Q  50 ttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||| |||||    
T  14418470 ttaggcttaaatagctaaataaattaattaattata 14418505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 11671979 - 11672021
Alignment:
Q  43 ttttcgtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||| |||||||||||||||||||||||||||| ||| |||||    
T  11671979 ttttagtttaggcttaaatagctaaataaattatttaattata 11672021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 12905864 - 12905906
Alignment:
Q  43 ttttcgtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||| |||||||||||||||||||||||||||| ||| |||||    
T  12905864 ttttagtttaggcttaaatagctaaataaattatttaattata 12905906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 23298186 - 23298144
Alignment:
Q  43 ttttcgtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||| |||||||||||||||||||||||||||| ||| |||||    
T  23298186 ttttagtttaggcttaaatagctaaataaattatttaattata 23298144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 39952761 - 39952803
Alignment:
Q  43 ttttcgtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||| |||||||||||||||||||||||||||| ||| |||||    
T  39952761 ttttagtttaggcttaaatagctaaataaattatttaattata 39952803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 48080303 - 48080345
Alignment:
Q  43 ttttcgtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||| |||||||||||||||||||||||||||| ||| |||||    
T  48080303 ttttagtttaggcttaaatagctaaataaattatttaattata 48080345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 50508730 - 50508688
Alignment:
Q  43 ttttcgtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||| |||||||||||||||||||||||||||| ||| |||||    
T  50508730 ttttagtttaggcttaaatagctaaataaattatttaattata 50508688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 39352714 - 39352751
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  39352714 gtttaggcttaaataactaaataaattaattaattata 39352751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 44792491 - 44792454
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  44792491 gtttaggcttaaacagctaaataaattaattaattata 44792454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 46584820 - 46584857
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  46584820 gtttgggcttaaatagctaaataaattaattaattata 46584857  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 49360209 - 49360246
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  49360209 gtttaggctgaaatagctaaataaattaattaattata 49360246  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 5040912 - 5040880
Alignment:
Q  43 ttttcgtttaggcttaaatagctaaataaatta 75  Q
    |||| ||||||||||||||||||||||||||||    
T  5040912 ttttagtttaggcttaaatagctaaataaatta 5040880  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 19618940 - 19618976
Alignment:
Q  49 tttaggcttaaatagctaaataaattaattagttata 85  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  19618940 tttaggcttaaatagctaaataaataaattaattata 19618976  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 3329419 - 3329456
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  3329419 gtttaggcttaaatagctaaataaattaattaattata 3329456  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 4481313 - 4481350
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  4481313 gtttaggcttaaatagctaaataaattaattaattata 4481350  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 17961303 - 17961266
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  17961303 gtttaggcttaaatagctaaataaattaattaattata 17961266  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 23231991 - 23232028
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  23231991 gtttaggcttaaatagctaaataaattaattaattata 23232028  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 30241684 - 30241721
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  30241684 gtttaggcttaaatagctaaataaattaattaattata 30241721  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 33867394 - 33867357
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||||||||| |||||    
T  33867394 gtttaggcttaaatagctaaataaattaattaattata 33867357  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 667825 - 667783
Alignment:
Q  43 ttttcgtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||| |||||||||||||||||||||||||||| ||| |||||    
T  667825 ttttagtttaggcttaaatagctaaataaattatttaattata 667783  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 4592042 - 4592005
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  4592042 gtttaggcttaaatagctaaattaattaattaattata 4592005  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 12758014 - 12758051
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  12758014 gtttaggcttaaatagctaaattaattaattaattata 12758051  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 29155576 - 29155613
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  29155576 gtttaggcttaaatagctaaataaataaattaattata 29155613  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 25178844 - 25178777
Alignment:
Q  24 gttattgtattaagtagttttttcgtttaggctta------aatagctaaataaattaattagttata 85  Q
    |||||| ||||||||||||||| ||||||||||||      ||||||||||||||||||||| |||||    
T  25178844 gttattctattaagtagtttttacgtttaggcttaggcttaaatagctaaataaattaattaattata 25178777  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 1667420 - 1667462
Alignment:
Q  43 ttttcgtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||| |||||||||||||||||||||||||||| ||| |||||    
T  1667420 ttttagtttaggcttaaatagctaaataaattatttaattata 1667462  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 6109876 - 6109918
Alignment:
Q  43 ttttcgtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||| |||||||||||||||||||||||||||| ||| |||||    
T  6109876 ttttagtttaggcttaaatagctaaataaattatttaattata 6109918  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 30801469 - 30801507
Alignment:
Q  23 tgttattgtattaagtagttttttcgtttaggcttaaat 61  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  30801469 tgttattgtattaagtagttttttggtttaggtttaaat 30801507  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 3616719 - 3616682
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  3616719 gtttaggcttaaatagttaaataaattaattaattata 3616682  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 7057867 - 7057904
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  7057867 gtttaggcttaaatagttaaataaattaattaattata 7057904  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 24789772 - 24789809
Alignment:
Q  48 gtttaggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  24789772 gtttaggcttaaatagctaaattaattaattaattata 24789809  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 30801510 - 30801543
Alignment:
Q  52 aggcttaaatagctaaataaattaattagttata 85  Q
    |||||||||||||||||| |||||||||||||||    
T  30801510 aggcttaaatagctaaattaattaattagttata 30801543  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 2620815 - 2620783
Alignment:
Q  43 ttttcgtttaggcttaaatagctaaataaatta 75  Q
    |||| ||||||||||||||||||||||||||||    
T  2620815 ttttagtttaggcttaaatagctaaataaatta 2620783  T

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Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 221791 - 221753
Alignment:
Q  38 tagttttttcgtttaggcttaaatagctaaataaattaa 76  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  221791 tagtttttaggtttaggcttaaatagctaaataaattaa 221753  T

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