View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10466_low_103 (Length: 209)
Name: NF10466_low_103
Description: NF10466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10466_low_103 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 43844423 - 43844600
Alignment:
| Q |
15 |
cataggcacaataaatgcaaaaattctaaaagccaacaaccatgccgggtgaattccctttaggctaggcttccaagtttcatcctcgtacaaaattgat |
114 |
Q |
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| T |
43844423 |
cataagcacaataaatgcaaaaattctaaaagccaacaaccatgccgggtgaattccctttaggctaggcttccaagtttcatcctcgtacaaaattgat |
43844522 |
T |
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| Q |
115 |
gaagatgatgtttctttttggatttccatgtcatcatttcttgttggcttccatgataaaagtaaaacctcgtacttg |
192 |
Q |
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| T |
43844523 |
gatgatgatgtttctttttggatttccatgtcatcatttcttgttggcttccatgataaaagtaaaacctcgtacttg |
43844600 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 34894648 - 34894745
Alignment:
| Q |
20 |
gcacaataaatgcaaaaattctaaaagccaacaaccatgccgggtgaattccctttaggctaggcttccaagtttcatcctcgtacaaaattgatgaa |
117 |
Q |
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|||||||||| ||||||| || ||||||||| | ||| || ||||||||||| || | | ||||||||||||||||||||| |||||||||| |||| |
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| T |
34894648 |
gcacaataaacgcaaaaactcgaaaagccaaaagccaagcagggtgaattcctttcaaacaaggcttccaagtttcatcctcatacaaaattgctgaa |
34894745 |
T |
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